chr3 : 51,962,270 – 51,962,494
224 bp 17 TFs 2 linked genes
This 224 bp open chromatin element is linked to PCBP4 and ENSG00000280422 and is bound by 17 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PCBP4 5.0 kb Proximal Proximity
ENSG00000280422 8.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:51,957,270 – 51,967,494
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 122 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 205 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 217 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 224 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 224 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 224 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 198 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 224 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 206 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 119 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 184 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 131 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 136 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 134 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 165 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 224 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 224 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 224 bp overlap
NEUROD1 3 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 224 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 224 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 224 bp overlap
NR3C1 1 dataset
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 50 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 224 bp overlap
PGR 1 dataset
ChIP T-47D GSE31129.PGR.T-47D 55 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 224 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 224 bp overlap