chr3 : 56,874,031 – 56,874,571
540 bp 83 TFs 3 linked genes
This 540 bp open chromatin element is linked to TASOR, ARHGEF3, and IL17RD and is bound by 83 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TASOR 191.2 kb Distal Multiome
ARHGEF3 204.9 kb Distal Multiome
IL17RD 290.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:56,869,031 – 56,879,571
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
BCL11A 2 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 59 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 261 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 202 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 197 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 296 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 307 bp overlap
ChIP K562 ENCFF673OEZ 333 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 281 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 296 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 141 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 223 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 278 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 206 bp overlap
DPRX 2 datasets
Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 540 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 274 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 370 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 193 bp overlap
ESRRA 1 dataset
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 141 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 92 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 169 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 233 bp overlap
ChIP DE DE-FOXA2-1 540 bp overlap
ChIP DE DE-FOXA2-2 540 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 295 bp overlap
ChIP SK-N-SH ENCFF124KVL 94 bp overlap
GATA1 11 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 126 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 258 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 250 bp overlap
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 112 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 340 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 263 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 442 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 262 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 235 bp overlap
GATA2 15 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 479 bp overlap
ChIP CD34_DMSO GSE60792.GATA2.CD34_DMSO 310 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 338 bp overlap
ChIP K562 ENCFF830LLA 467 bp overlap
ChIP ME-1 GSE46044.GATA2.ME-1 238 bp overlap
ChIP SH-SY5Y ENCFF485YIB 320 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 540 bp overlap
ChIP SK-N-SH ENCFF764OZD 321 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 540 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 331 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 172 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 176 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 487 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 194 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 174 bp overlap
GATA3 12 datasets
ChIP BE2C GSE65664.GATA3.BE2C 221 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 226 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 327 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 249 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 136 bp overlap
ChIP SH-SY5Y ENCFF475HYF 373 bp overlap
ChIP SH-SY5Y ENCFF475HYF 170 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 540 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 181 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 241 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 243 bp overlap
ChIP SK-N-SH ENCFF040SSB 262 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 540 bp overlap
ChIP DE DE-GATA4-2 540 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 540 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 184 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 385 bp overlap
ChIP DE DE-GATA6-1 540 bp overlap
ChIP DE DE-GATA6-2 540 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 517 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 540 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 469 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 540 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 540 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 540 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 540 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 540 bp overlap
ChIP foregut GSE117136.GATA6.foregut 296 bp overlap
GFI1B 6 datasets
ChIP CD34 GSE52924.GFI1B.CD34 272 bp overlap
ChIP K-562 ENCSR509GDT.GFI1B.K-562 182 bp overlap
ChIP SET-2 GSE121424.GFI1B.SET-2 361 bp overlap
ChIP SET-2_GSK GSE121424.GFI1B.SET-2_GSK 333 bp overlap
ChIP SET-2_GSK_insR GSE121424.GFI1B.SET-2_GSK_insR 375 bp overlap
ChIP SET-2_insR GSE121424.GFI1B.SET-2_insR 309 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 296 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 341 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 372 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 258 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 414 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 293 bp overlap
ChIP K562 ENCFF968WBH 389 bp overlap
HSF1 4 datasets
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
ChIP MO91 GSE45852.HSF1.MO91 308 bp overlap
ChIP MO91_27A_20UM GSE45852.HSF1.MO91_27A_20UM 191 bp overlap
HSF2 2 datasets
Motif DE_48h DE_48h-HSF2_MA0770.1 13 bp overlap
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
Motif DE_60h DE_60h-HSF4_MA0771.1 13 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 371 bp overlap
ChIP SK-N-SH ENCFF285GEQ 94 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 540 bp overlap
KDM1A 4 datasets
ChIP K-562 GSE117944.KDM1A.K-562 282 bp overlap
ChIP SET-2 GSE121424.KDM1A.SET-2 196 bp overlap
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 226 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 479 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 298 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 298 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 285 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 247 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 253 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 278 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 128 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 447 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 300 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 444 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 316 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 404 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 325 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 200 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 204 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 540 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 317 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 316 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 129 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 366 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 310 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 292 bp overlap
Nr5A2 1 dataset
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 449 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 163 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 272 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 540 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 204 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 126 bp overlap
RCOR1 3 datasets
ChIP SK-N-SH ENCFF518EXB 252 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 94 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 411 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 326 bp overlap
RUNX1 5 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 208 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 208 bp overlap
ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 241 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 352 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 352 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 475 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 531 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 460 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 485 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 247 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 336 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 221 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 213 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 214 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 229 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 540 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 203 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 262 bp overlap
TAL1 13 datasets
ChIP CD34 GSE52924.TAL1.CD34 295 bp overlap
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 369 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 303 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 260 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 165 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 138 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 192 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 231 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 214 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 144 bp overlap
ChIP ME-1 GSE46044.TAL1.ME-1 215 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 324 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 300 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 381 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 357 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 185 bp overlap
ChIP SK-N-SH ENCFF147AHB 352 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 223 bp overlap
ChIP SK-N-SH ENCFF270OWF 275 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 211 bp overlap
TEAD1 1 dataset
ChIP K562 ENCFF465AQA 297 bp overlap
TEAD4 5 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 274 bp overlap
ChIP K562 ENCFF673NIK 327 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 274 bp overlap
ChIP SK-N-SH ENCFF754TJT 256 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 227 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 322 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 232 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 226 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 235 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 202 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 202 bp overlap
ZBTB12 2 datasets
Motif DE_48h DE_48h-ZBTB12_MA1649.2 7 bp overlap
Motif DE_60h DE_60h-ZBTB12_MA1649.2 7 bp overlap
ZBTB26 1 dataset
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 70 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 206 bp overlap
ZNF214 1 dataset
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap