chr3 : 58,497,160 – 58,497,381
221 bp 68 TFs 2 linked genes
This 221 bp open chromatin element is linked to KCTD6 and ENSG00000272360 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
KCTD6 5.1 kb Proximal Proximity
ENSG00000272360 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:58,492,160 – 58,502,381
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 179 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 210 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 221 bp overlap
CEBPB 3 datasets
ChIP Ishikawa ENCFF010USJ 169 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 201 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 123 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 221 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 192 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 221 bp overlap
CTCF 2 datasets
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 221 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 221 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 200 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 221 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 221 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 85 bp overlap
ESR1 19 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 221 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 205 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 114 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 209 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 128 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 221 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 140 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 221 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 200 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 186 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 204 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 203 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 157 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 132 bp overlap
ChIP T-47D_JC4732 GSE126004.ESR1.T-47D_JC4732 125 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 221 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 196 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 71 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 165 bp overlap
EZH2 1 dataset
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 82 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 125 bp overlap
FOXA1 3 datasets
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 68 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 199 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 99 bp overlap
GABPA 1 dataset
ChIP MCF-7 GSE72082.GABPA.MCF-7 71 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 104 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 186 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 115 bp overlap
IRF2BP2 1 dataset
ChIP HEK293 GSE124636.IRF2BP2.HEK293 205 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 146 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 123 bp overlap
MAX 3 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 221 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 198 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 166 bp overlap
MED1 3 datasets
ChIP SGBS GSE64233.MED1.SGBS 126 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 162 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 177 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 221 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 221 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 221 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 221 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 221 bp overlap
ChIP hESC GSE18292.NANOG.hESC 159 bp overlap
NFIC 3 datasets
ChIP Ishikawa ENCFF029AAD 221 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 212 bp overlap
ChIP SK-N-SH ENCFF965AKM 50 bp overlap
NR3C1 4 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 221 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 215 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.NR3C1.Ishikawa_Dex_E2 180 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 166 bp overlap
PGR 2 datasets
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 213 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 221 bp overlap
POU2AF1 1 dataset
ChIP pre-B-cell GSE107886.POU2AF1.pre-B-cell 221 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 200 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 162 bp overlap
POU2F2 1 dataset
ChIP GM12878 ENCFF207RKY 221 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 221 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 221 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 221 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 175 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 221 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 221 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 221 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 174 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 221 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 153 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 72 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 139 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 221 bp overlap
RBPJ 3 datasets
ChIP GIC GSE79734.RBPJ.GIC 212 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 90 bp overlap
ChIP MUTUL GSE75503.RBPJ.MUTUL 155 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 98 bp overlap
REST 3 datasets
ChIP H1 ENCFF429RUE 117 bp overlap
ChIP neural ENCSR000BTV.REST.neural 136 bp overlap
ChIP neural cell ENCFF882LXX 221 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 214 bp overlap
SIX2 2 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 178 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 182 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 179 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 167 bp overlap
SMARCA4 10 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 150 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 221 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 221 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 221 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 221 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 221 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 221 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 131 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 221 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 221 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 221 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 171 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 221 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 90 bp overlap
ChIP hESC GSE18292.SOX2.hESC 103 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 203 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 210 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 221 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 187 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 221 bp overlap
STAT3 11 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 93 bp overlap
ChIP T-47D_JC4735 GSE126004.STAT3.T-47D_JC4735 168 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 99 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 221 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 161 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 221 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 171 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 221 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 221 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 221 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 221 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 221 bp overlap
TEAD4 4 datasets
ChIP H1 ENCFF778PAX 211 bp overlap
ChIP Ishikawa ENCFF772OTG 221 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 201 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 164 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 221 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 57 bp overlap
TP63 8 datasets
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 78 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 92 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 82 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 61 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 166 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 133 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 98 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 72 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 221 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 221 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 221 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 221 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 221 bp overlap
ZNF182 1 dataset
ChIP HEK293T GSE78099.ZNF182.HEK293T 69 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 96 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 70 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 183 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 203 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 175 bp overlap
ZSCAN16 2 datasets
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ChIP HEK293 GSE76494.ZSCAN16.HEK293 185 bp overlap
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