chr3 : 63,594,941 – 63,595,549
608 bp 102 TFs 2 linked genes
This 608 bp open chromatin element is linked to ATXN7 and THOC7 and is bound by 102 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ATXN7 268.6 kb Distal Multiome
THOC7 268.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:63,589,941 – 63,600,549
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
AHR 2 datasets
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 139 bp overlap
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 212 bp overlap
Arid3a 1 dataset
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
CEBPD 1 dataset
Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 342 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 272 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 328 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 284 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 494 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE68356.ESR1.MCF-7 205 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 377 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 191 bp overlap
ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 379 bp overlap
ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 244 bp overlap
ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 244 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 553 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 234 bp overlap
FOXA1 1 dataset
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 289 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 604 bp overlap
ChIP DE DE-FOXA2-2 608 bp overlap
FOXD2 4 datasets
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap
FOXE1 2 datasets
Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
GATA2 1 dataset
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
GATA3 3 datasets
ChIP MCF-7 ENCFF178GBS 116 bp overlap
ChIP MCF-7 ENCFF178GBS 319 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 228 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 607 bp overlap
ChIP DE DE-GATA4-2 608 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 608 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 608 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 242 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 458 bp overlap
ChIP DE DE-GATA6-2 585 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 481 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 269 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 416 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 524 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 334 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 540 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 543 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 331 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 238 bp overlap
GLIS3 3 datasets
Motif DE_36h DE_36h-GLIS3_MA0737.1 14 bp overlap
Motif DE_48h DE_48h-GLIS3_MA0737.1 14 bp overlap
Motif DE_72h DE_72h-GLIS3_MA0737.1 14 bp overlap
GRHL2 3 datasets
Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap
Motif DE_48h DE_48h-GRHL2_MA1105.3 8 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 235 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HNF1A 1 dataset
Motif DE_36h DE_36h-HNF1A_MA0046.3 13 bp overlap
HOXA10 1 dataset
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
HOXA3 1 dataset
Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_36h DE_36h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_36h DE_36h-HOXC10_MA0905.2 9 bp overlap
HOXC4 1 dataset
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_36h DE_36h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_36h DE_36h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_36h DE_36h-HOXD11_MA0908.2 9 bp overlap
HOXD4 1 dataset
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
HOXD9 1 dataset
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Hoxa11 1 dataset
Motif DE_36h DE_36h-Hoxa11_MA0911.2 9 bp overlap
IKZF1 2 datasets
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 302 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 296 bp overlap
LIN54 2 datasets
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 464 bp overlap
NCOA1 2 datasets
ChIP MCF-7 ERP000901.NCOA1.MCF-7 175 bp overlap
ChIP MCF-7_E2 ERP000901.NCOA1.MCF-7_E2 124 bp overlap
NCOA2 2 datasets
ChIP MCF-7 ERP000901.NCOA2.MCF-7 249 bp overlap
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 213 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 305 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 281 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 224 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 287 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 300 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 298 bp overlap
NFATC3 1 dataset
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NFIA 2 datasets
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 3 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_36h DE_36h-NFIX_MA1528.2 14 bp overlap
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NKX2-3 1 dataset
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
NKX6-1 1 dataset
Motif DE_36h DE_36h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
NRIP1 3 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 280 bp overlap
ChIP MCF-7 ERP005838.NRIP1.MCF-7 225 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 268 bp overlap
Nfat5 1 dataset
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nkx3-2 1 dataset
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Nr2F6 1 dataset
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 372 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 152 bp overlap
POU1F1 1 dataset
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F2 1 dataset
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 288 bp overlap
Pou5f1::Sox2 4 datasets
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_36h DE_36h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 275 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
SATB1 1 dataset
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 161 bp overlap
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 406 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 212 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 295 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE115602.SMC1A.MCF-7 163 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 428 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 539 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 244 bp overlap
ChIP MCF-7_jc5843 GSE126004.STAT3.MCF-7_jc5843 284 bp overlap
Sox1 2 datasets
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Stat5a 1 dataset
Motif DE_36h DE_36h-Stat5a_MA1624.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 191 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 138 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Yy1 2 datasets
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
ZBTB11 2 datasets
ChIP K562 ENCFF694AXU 317 bp overlap
ChIP K562 ENCFF694AXU 162 bp overlap
ZBTB17 2 datasets
Motif DE_36h DE_36h-ZBTB17_MA2102.1 8 bp overlap
Motif DE_48h DE_48h-ZBTB17_MA2102.1 8 bp overlap
ZFP42 2 datasets
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
Motif DE_48h DE_48h-ZFP42_MA1651.2 13 bp overlap
ZFX 2 datasets
ChIP MCF-7 ENCFF009NAJ 380 bp overlap
ChIP MCF-7 ENCSR435OQD.ZFX.MCF-7 542 bp overlap
ZNF136 1 dataset
Motif DE_36h DE_36h-ZNF136_MA1588.1 15 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 279 bp overlap
ZNF574 1 dataset
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
ZNF667 1 dataset
Motif DE_48h DE_48h-ZNF667_MA1984.2 11 bp overlap
ZNF76 2 datasets
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
Motif DE_48h DE_48h-ZNF76_MA1716.2 17 bp overlap
Zfx 3 datasets
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap
Motif DE_48h DE_48h-Zfx_MA0146.3 10 bp overlap
Motif DE_72h DE_72h-Zfx_MA0146.3 10 bp overlap
Zic1::Zic2 2 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap