chr3 : 63,617,033 – 63,617,742
709 bp 26 TFs 2 linked genes
This 709 bp open chromatin element is linked to ATXN7 and THOC7 and is bound by 26 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ATXN7 246.3 kb Distal Multiome
THOC7 246.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:63,612,033 – 63,622,742
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 85 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 108 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 110 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 659 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 227 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 545 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 709 bp overlap
CTCF 5 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 402 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 350 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 210 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 243 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 330 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 198 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 258 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 576 bp overlap
ChIP DE DE-FOXA2-2 607 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 599 bp overlap
ChIP DE DE-GATA4-2 628 bp overlap
ChIP foregut GSE117136.GATA4.foregut 475 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 318 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 566 bp overlap
ChIP DE DE-GATA6-2 657 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 583 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 405 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 485 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 461 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 529 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 601 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 437 bp overlap
ChIP foregut GSE117136.GATA6.foregut 419 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 269 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 347 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 313 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 650 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 349 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 266 bp overlap
NCOA1 1 dataset
ChIP MCF-7 ERP000901.NCOA1.MCF-7 126 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 56 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 709 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 348 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 310 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 240 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 556 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 653 bp overlap
RORB 2 datasets
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 358 bp overlap
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 262 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 543 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 466 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 381 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 329 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 354 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 333 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 387 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 405 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 295 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 391 bp overlap
ZBTB40 1 dataset
ChIP MCF-7 ENCFF044DWL 79 bp overlap
ZFX 2 datasets
ChIP MCF-7 ENCFF009NAJ 512 bp overlap
ChIP MCF-7 ENCFF009NAJ 638 bp overlap