chr1 : 58,447,893 – 58,448,830
937 bp 88 TFs 3 linked genes
This 937 bp open chromatin element is linked to OMA1, DAB1, and MYSM1 and is bound by 88 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
OMA1 98.5 kb Distal Multiome
DAB1 98.5 kb Distal Multiome
MYSM1 251.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:58,442,893 – 58,453,830
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 210 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 297 bp overlap
CEBPA 4 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 114 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 122 bp overlap
ChIP U-937 ERP008568.CEBPA.U-937 210 bp overlap
ChIP liver ERP002306.CEBPA.liver 185 bp overlap
CEBPB 3 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 822 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 203 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 180 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 115 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 223 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 247 bp overlap
ESR1 8 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 268 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 143 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 275 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 162 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 119 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 143 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 259 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 275 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 422 bp overlap
FOXA1 2 datasets
Motif DE_60h DE_60h-FOXA1_MA0148.5 8 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 196 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 454 bp overlap
ChIP DE DE-FOXA2-1 727 bp overlap
ChIP DE DE-FOXA2-2 747 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
FOXB1 1 dataset
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXG1 1 dataset
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
FOXO4 1 dataset
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
FOXP3 1 dataset
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
FOXS1 1 dataset
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
GATA1 4 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 327 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 227 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 244 bp overlap
GATA2 13 datasets
ChIP ESF GSE108408.GATA2.ESF 489 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 137 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 137 bp overlap
ChIP SH-SY5Y ENCFF485YIB 371 bp overlap
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 591 bp overlap
ChIP SK-N-SH ENCFF764OZD 355 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 270 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 446 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 553 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 351 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 330 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 484 bp overlap
GATA3 15 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 212 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 190 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 249 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 183 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 285 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 310 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 279 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 249 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 150 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 187 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 219 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 312 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 253 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 182 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 202 bp overlap
ChIP DE DE-GATA4-1 769 bp overlap
ChIP DE DE-GATA4-2 786 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 229 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 507 bp overlap
ChIP foregut GSE117136.GATA4.foregut 541 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 515 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 490 bp overlap
GATA6 15 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 241 bp overlap
ChIP DE DE-GATA6-1 896 bp overlap
ChIP DE DE-GATA6-2 814 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 714 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 761 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 762 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 792 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 857 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 898 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 653 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 670 bp overlap
ChIP foregut GSE117136.GATA6.foregut 320 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 314 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 254 bp overlap
GFI1 1 dataset
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 341 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 437 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 416 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 63 bp overlap
ChIP HepG2 ENCFF854JLR 99 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 356 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 220 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 254 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MYC 1 dataset
ChIP BJ GSE36570.MYC.BJ 129 bp overlap
MYCN 6 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 173 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 263 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 319 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 234 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 257 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 390 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 211 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 191 bp overlap
NFYA 1 dataset
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
NFYC 1 dataset
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
NR3C1 1 dataset
ChIP HCC1937 GSE152203.NR3C1.HCC1937 245 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 177 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 200 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 304 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 239 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
RBM25 1 dataset
ChIP K562 ENCFF248CGR 275 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 352 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 272 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 193 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 590 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 257 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 647 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 439 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S10-DE-d1-BAF155-exp1 352 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 170 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 215 bp overlap
SP1 1 dataset
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Stat5b 1 dataset
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 184 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 239 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 213 bp overlap
TCF7 1 dataset
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TEAD4 3 datasets
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 375 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 390 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 280 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 530 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 216 bp overlap
TFAP2C 3 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 370 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 195 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 448 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 182 bp overlap
ZNF135 1 dataset
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF263 1 dataset
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 205 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF85 1 dataset
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap