chr3 : 73,361,378 – 73,362,083
705 bp 84 TFs 2 linked genes
This 705 bp open chromatin element is linked to PDZRN3 and EBLN2 and is bound by 84 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PDZRN3 263.2 kb Distal Multiome
EBLN2 300.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:73,356,378 – 73,367,083
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 363 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 447 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 247 bp overlap
BRD4 2 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 278 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 272 bp overlap
CDX1 4 datasets
Motif DE_36h DE_36h-CDX1_MA0878.3 10 bp overlap
Motif DE_48h DE_48h-CDX1_MA0878.3 10 bp overlap
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
Motif DE_72h DE_72h-CDX1_MA0878.3 10 bp overlap
CDX4 4 datasets
Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap
Motif DE_48h DE_48h-CDX4_MA1473.2 9 bp overlap
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
Motif DE_72h DE_72h-CDX4_MA1473.2 9 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 266 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 235 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 67 bp overlap
Dux 3 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 238 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 440 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 218 bp overlap
ETV1 1 dataset
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
FIGLA 4 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 318 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-FOXA2-1 532 bp overlap
ChIP DE DE-FOXA2-2 548 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 441 bp overlap
Foxj2 4 datasets
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap
Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
Foxj3 4 datasets
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Motif DE_48h DE_48h-Foxj3_MA0851.2 9 bp overlap
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap
GATA1 1 dataset
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 153 bp overlap
GATA2 7 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 471 bp overlap
ChIP SK-N-SH ENCFF764OZD 141 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 402 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 194 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 206 bp overlap
ChIP WA09 GSE105081.GATA2.WA09 281 bp overlap
GATA3 7 datasets
ChIP BE2C GSE65664.GATA3.BE2C 303 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 358 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 381 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 468 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 291 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 394 bp overlap
ChIP WA09 GSE105081.GATA3.WA09 152 bp overlap
GATA4 10 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 283 bp overlap
ChIP DE DE-GATA4-1 705 bp overlap
ChIP DE DE-GATA4-2 694 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 313 bp overlap
ChIP foregut GSE117136.GATA4.foregut 551 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 639 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 624 bp overlap
GATA5 3 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 21 datasets
ChIP AGS GSE51705.GATA6.AGS 358 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 304 bp overlap
ChIP DE DE-GATA6-1 641 bp overlap
ChIP DE DE-GATA6-2 666 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 453 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 520 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 415 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 656 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 442 bp overlap
ChIP H9 ERP004206.GATA6.H9 195 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 660 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 509 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 627 bp overlap
ChIP foregut GSE117136.GATA6.foregut 584 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 369 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 668 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 514 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 512 bp overlap
Gata3 3 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 371 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 393 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 515 bp overlap
HSF1 4 datasets
ChIP HCT-116_A10_43 GSE152144.HSF1.HCT-116_A10_43 312 bp overlap
ChIP HCT-116_A8_43 GSE152144.HSF1.HCT-116_A8_43 299 bp overlap
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 332 bp overlap
ChIP U2OS_HEAT_20 GSE60984.HSF1.U2OS_HEAT_20 281 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
IRF3 1 dataset
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 609 bp overlap
ChIP SK-N-SH ENCFF285GEQ 251 bp overlap
Ikzf3 1 dataset
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
Irf1 1 dataset
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 366 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 505 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 365 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 501 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 199 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 233 bp overlap
PDX1 3 datasets
ChIP hESC GSE58685.PDX1.hESC 157 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 202 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 403 bp overlap
PHOX2A 3 datasets
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 5 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 411 bp overlap
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 274 bp overlap
POU4F1 4 datasets
Motif DE_36h DE_36h-POU4F1_MA0790.2 12 bp overlap
Motif DE_48h DE_48h-POU4F1_MA0790.2 12 bp overlap
Motif DE_60h DE_60h-POU4F1_MA0790.2 12 bp overlap
Motif DE_72h DE_72h-POU4F1_MA0790.2 12 bp overlap
POU4F3 4 datasets
Motif DE_36h DE_36h-POU4F3_MA0791.2 12 bp overlap
Motif DE_48h DE_48h-POU4F3_MA0791.2 12 bp overlap
Motif DE_60h DE_60h-POU4F3_MA0791.2 12 bp overlap
Motif DE_72h DE_72h-POU4F3_MA0791.2 12 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 229 bp overlap
PROP1 3 datasets
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Pgr 2 datasets
Motif DE_48h DE_48h-Pgr_MA2323.1 17 bp overlap
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
RAD21 1 dataset
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 470 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 438 bp overlap
SATB1 2 datasets
Motif DE_48h DE_48h-SATB1_MA1963.2 7 bp overlap
Motif DE_60h DE_60h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 481 bp overlap
SMAD2_3 3 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 410 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 264 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 163 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 183 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 345 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 344 bp overlap
SOX4 2 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SPIC 2 datasets
Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap
Motif DE_48h DE_48h-SPIC_MA0687.2 13 bp overlap
SREBF1 4 datasets
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Motif DE_60h DE_60h-SREBF1_MA0829.3 10 bp overlap
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
Stat2 4 datasets
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 253 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 342 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 402 bp overlap
TCF4 2 datasets
ChIP SK-N-SH ENCFF270OWF 437 bp overlap
ChIP SK-N-SH ENCFF270OWF 321 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 299 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 299 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 448 bp overlap
TFAP2B 4 datasets
Motif DE_48h DE_48h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_60h DE_60h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0812.2 9 bp overlap
ChIP SK-N-SH ENCFF869XXQ 111 bp overlap
TRPS1 3 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 480 bp overlap
ZEB1 4 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 484 bp overlap
ZIM3 2 datasets
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF136 2 datasets
Motif DE_48h DE_48h-ZNF136_MA1588.1 15 bp overlap
Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap
ZNF184 2 datasets
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF274 1 dataset
ChIP H1 ENCFF434LDY 52 bp overlap
ZNF317 3 datasets
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF354A 1 dataset
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
ZNF547 4 datasets
Motif DE_36h DE_36h-ZNF547_MA2334.1 13 bp overlap
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
Motif DE_72h DE_72h-ZNF547_MA2334.1 13 bp overlap
ZNF574 2 datasets
Motif DE_48h DE_48h-ZNF574_MA1982.2 14 bp overlap
Motif DE_60h DE_60h-ZNF574_MA1982.2 14 bp overlap
ZNF677 3 datasets
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF768 3 datasets
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap