chr3 : 87,801,414 – 87,801,788
374 bp 56 TFs 2 linked genes
This 374 bp open chromatin element is linked to ENSG00000239572 and HTR1F and is bound by 56 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000239572 7.9 kb Proximal Proximity
HTR1F 8.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:87,796,414 – 87,806,788
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 357 bp overlap
ChIP K562 ENCFF938UXQ 349 bp overlap
BRD3 2 datasets
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 242 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 260 bp overlap
BRD4 3 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 241 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 196 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 266 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 280 bp overlap
ChIP K562 ENCFF963TXY 254 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 325 bp overlap
ChIP K562 ENCFF673OEZ 363 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 127 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 277 bp overlap
ChIP K562 ENCFF403WPG 374 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 300 bp overlap
ChIP K562 ENCFF739JDE 374 bp overlap
ChIP K562 ENCFF775HUO 330 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 213 bp overlap
ChIP K562 ENCFF226VMS 309 bp overlap
FOXM1 1 dataset
ChIP K562 ENCFF255RHV 342 bp overlap
GATA1 6 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 133 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 221 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 186 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 270 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 189 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 229 bp overlap
GATA2 6 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 374 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 188 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 184 bp overlap
ChIP K562 ENCFF513FTZ 301 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
ChIP K562 ENCFF830LLA 374 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 367 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 320 bp overlap
HDAC1 4 datasets
ChIP K-562 ENCSR711VWL.HDAC1.K-562 247 bp overlap
ChIP K-562 ENCSR387UWP.HDAC1.K-562 248 bp overlap
ChIP K562 ENCFF928TKZ 369 bp overlap
ChIP K562 ENCFF968WBH 374 bp overlap
HDAC2 4 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 288 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 256 bp overlap
ChIP K562 ENCFF744ALD 226 bp overlap
ChIP K562 ENCFF919OMP 374 bp overlap
HMBOX1 2 datasets
ChIP K562 ENCFF055GAZ 374 bp overlap
ChIP K562 ENCFF317JJX 374 bp overlap
HNRNPK 2 datasets
ChIP HepG2 ENCFF826MXP 102 bp overlap
ChIP K562 ENCFF954RNO 57 bp overlap
IKZF1 4 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 243 bp overlap
ChIP K562 ENCFF348IBL 225 bp overlap
ChIP K562 ENCFF348IBL 175 bp overlap
ChIP K562 ENCFF771OHZ 271 bp overlap
JUND 2 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 135 bp overlap
ChIP K562 ENCFF830LVJ 273 bp overlap
KDM1A 3 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 260 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 238 bp overlap
ChIP K562 ENCFF128TYE 351 bp overlap
KLF16 2 datasets
ChIP K-562 ENCSR760UVO.KLF16.K-562 129 bp overlap
ChIP K562 ENCFF464PIV 294 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 364 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 286 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 106 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF880VZB 260 bp overlap
MYNN 2 datasets
ChIP K-562 ENCSR737LTZ.MYNN.K-562 116 bp overlap
ChIP K562 ENCFF399UNK 325 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 297 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 249 bp overlap
ChIP K562 ENCFF788MPU 338 bp overlap
ChIP K562 ENCFF866HRM 227 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF163BSI 231 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 238 bp overlap
ChIP K562 ENCFF167YID 174 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 120 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 141 bp overlap
ChIP K562 ENCFF674RQA 371 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 170 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 309 bp overlap
ChIP K562 ENCFF236IUS 234 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF514URW 315 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 284 bp overlap
RNF2 2 datasets
ChIP K562 ENCFF653BQJ 166 bp overlap
ChIP K562 ENCFF653BQJ 374 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 264 bp overlap
ChIP K562 ENCFF506JCB 239 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 281 bp overlap
ChIP K562 ENCFF690CFF 374 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 246 bp overlap
ChIP K562 ENCFF059YCJ 360 bp overlap
STAT5A 2 datasets
ChIP K-562 ENCSR000BRR.STAT5A.K-562 147 bp overlap
ChIP K562 ENCFF226BTJ 301 bp overlap
TAL1 12 datasets
ChIP K-562 GSE107726.TAL1.K-562 300 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 287 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 228 bp overlap
ChIP K-562_MYO1D-Non-hub_KO GSE107726.TAL1.K-562_MYO1D-Non-hub_KO 165 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 235 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 236 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 245 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 239 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 248 bp overlap
ChIP K562 ENCFF620GMX 276 bp overlap
ChIP K562 ENCFF661CCK 77 bp overlap
ChIP erythroid GSE42390.TAL1.erythroid 136 bp overlap
TCF12 4 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 298 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 213 bp overlap
ChIP K562 ENCFF909RDY 301 bp overlap
ChIP K562 ENCFF931DJY 287 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 259 bp overlap
ChIP K562 ENCFF319QZT 117 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 197 bp overlap
TRIM24 1 dataset
ChIP K-562 ENCSR907MZR.TRIM24.K-562 204 bp overlap
TRIM28 1 dataset
ChIP K562 ENCFF172UPN 356 bp overlap
ZBTB2 2 datasets
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 247 bp overlap
ChIP K562 ENCFF290ESQ 352 bp overlap
ZEB2 4 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 275 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 220 bp overlap
ChIP K562 ENCFF795CMH 244 bp overlap
ChIP K562 ENCFF975RXS 374 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 135 bp overlap
ChIP K562 ENCFF255RZG 297 bp overlap
ZNF257 1 dataset
ChIP K-562 ENCSR492FKD.ZNF257.K-562 169 bp overlap
ZNF263 1 dataset
ChIP K562 ENCFF640RNA 374 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 374 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 175 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 160 bp overlap
ZNF592 1 dataset
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 374 bp overlap
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