chr3 : 98,514,790 – 98,515,181
391 bp 23 TFs 2 linked genes
This 391 bp open chromatin element is linked to ENSG00000248839 and CLDND1 and is bound by 23 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000248839 7.4 kb Proximal Proximity
CLDND1 7.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:98,509,790 – 98,520,181
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HCT-116 GSE47938.AFF4.HCT-116 371 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 192 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 159 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 254 bp overlap
FOXA1 2 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 116 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 165 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 69 bp overlap
ChIP DE DE-FOXA2-1 357 bp overlap
ChIP DE DE-FOXA2-2 328 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 137 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 105 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 391 bp overlap
ChIP DE DE-GATA4-2 391 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 254 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 215 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 272 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 381 bp overlap
ChIP DE DE-GATA6-2 391 bp overlap
MAF 1 dataset
ChIP lymphocyte_Th17_IL10+_Day5 GSE101389.MAF.lymphocyte_Th17_IL10+_Day5 103 bp overlap
MAFK 1 dataset
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 114 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 252 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 97 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 315 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 391 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 255 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 315 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 198 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 391 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 391 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 306 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 235 bp overlap
SMAD5 1 dataset
ChIP GM12878 ENCSR251OVJ.SMAD5.GM12878 113 bp overlap
STAT5B 2 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 177 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 205 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 391 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 321 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 287 bp overlap