chr3 : 107,237,025 – 107,237,235
210 bp 74 TFs 2 linked genes
This 210 bp open chromatin element is linked to LINC00882 and DUBR and is bound by 74 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00882 3.4 kb Proximal Proximity
DUBR 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:107,232,025 – 107,242,235
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
AR 8 datasets
ChIP DU145 GSE47987.AR.DU145 198 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 196 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 206 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 143 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 210 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 210 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 210 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 137 bp overlap
ARID1A 4 datasets
ChIP 12Z GSE129781.ARID1A.12Z 210 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 210 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 153 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 210 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 210 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 98 bp overlap
BRD2 4 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 210 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 130 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 167 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 88 bp overlap
BRD4 12 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 210 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 83 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 205 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 210 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 209 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 210 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 167 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 210 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 201 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 210 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 210 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 210 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 175 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 156 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 65 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 157 bp overlap
CTCF 3 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 171 bp overlap
ChIP Panc1 ENCFF056JQX 166 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 54 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 109 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 91 bp overlap
ChIP PC-3 GSE147455.EP300.PC-3 138 bp overlap
ESR1 24 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 200 bp overlap
ChIP MCF-7 GSE119702.ESR1.MCF-7 200 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 158 bp overlap
ChIP MCF-7_E2 GSE119702.ESR1.MCF-7_E2 200 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 210 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 210 bp overlap
ChIP MCF-7_E2_SRC-3 GSE119702.ESR1.MCF-7_E2_SRC-3 210 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 154 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 169 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 210 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 210 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 210 bp overlap
ChIP MCF-7_SRC3 GSE119702.ESR1.MCF-7_SRC3 210 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 210 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 203 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 210 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 210 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 182 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT_SRC-3 210 bp overlap
ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 210 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 182 bp overlap
ChIP MCF-7_shFbxo_OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_OHT_SRC-3 210 bp overlap
ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 210 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 180 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 55 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 97 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 138 bp overlap
FOXA1 3 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 189 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 94 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 62 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 133 bp overlap
GATA1 10 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 145 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 147 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 157 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 210 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 159 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 204 bp overlap
ChIP erythroblast ENCFF867JAR 210 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 210 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 200 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 210 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 210 bp overlap
ChIP SK-N-SH ENCFF764OZD 78 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 161 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 210 bp overlap
GATA3 7 datasets
ChIP Kelly GSE65664.GATA3.Kelly 210 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 203 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 210 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 164 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 210 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 210 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 161 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 210 bp overlap
ChIP DE DE-GATA4-2 210 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 174 bp overlap
ChIP foregut GSE117136.GATA4.foregut 210 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 210 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 207 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 210 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 210 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 210 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 167 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 210 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 210 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 194 bp overlap
ChIP foregut GSE117136.GATA6.foregut 210 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 210 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 188 bp overlap
GTF3C2 2 datasets
ChIP HeLa-S3 ENCFF144RTV 113 bp overlap
ChIP HeLa-S3 ENCSR000DNY.GTF3C2.HeLa-S3 56 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 180 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 210 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 175 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 105 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 177 bp overlap
JUND 2 datasets
ChIP HeLa-S3 ENCFF642OHL 131 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 86 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 210 bp overlap
KMT2A 1 dataset
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 99 bp overlap
MED1 1 dataset
ChIP SUM159PT_DMSO_24h GSE87418.MED1.SUM159PT_DMSO_24h 210 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 119 bp overlap
MYCN 1 dataset
ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 79 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 210 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 147 bp overlap
NR3C1 9 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 119 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 151 bp overlap
ChIP HeLa-B2_TA GSE24518.NR3C1.HeLa-B2_TA 195 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.NR3C1.HeLa-B2_TA_TNFA 210 bp overlap
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 205 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 210 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 210 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 210 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 210 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 201 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 193 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 210 bp overlap
PGR 3 datasets
ChIP AB32 GSE31129.PGR.AB32 210 bp overlap
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 210 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 210 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 210 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 72 bp overlap
PRDM1 1 dataset
ChIP HeLa-S3 ENCFF893HDJ 153 bp overlap
RAD21 2 datasets
ChIP HeLa-S3 ENCFF775CHI 140 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 170 bp overlap
RCOR1 2 datasets
ChIP HeLa GSE45441.RCOR1.HeLa 194 bp overlap
ChIP HeLa-S3 ENCFF471KYI 152 bp overlap
RELA 4 datasets
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 210 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 88 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 210 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 210 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 210 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 210 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 150 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 182 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 210 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 176 bp overlap
STAT3 4 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 107 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 210 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 86 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 210 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 146 bp overlap
TAL1 3 datasets
ChIP CD34 GSE52924.TAL1.CD34 152 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 101 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 144 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 169 bp overlap
TCF7L2 5 datasets
ChIP HeLa-S3 ENCFF673QAB 210 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 210 bp overlap
ChIP MCF-7 ENCFF219LIX 210 bp overlap
ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 210 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 210 bp overlap
TEAD4 2 datasets
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 140 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 64 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 128 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 185 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 108 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 108 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 210 bp overlap
ZFP36 4 datasets
ChIP A-549 ENCSR294JWV.ZFP36.A-549 96 bp overlap
ChIP A549 ENCFF505LUC 112 bp overlap
ChIP HeLa-S3 ENCSR184MFH.ZFP36.HeLa-S3 113 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 114 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 210 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 210 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 210 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 194 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 210 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 210 bp overlap
ZNF436 1 dataset
ChIP HEK293 GSE76494.ZNF436.HEK293 84 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 210 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 189 bp overlap
ZNF629 3 datasets
ChIP HEK293 ENCFF096ELQ 210 bp overlap
ChIP HEK293 ENCFF096ELQ 114 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 157 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 210 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 99 bp overlap