chr1 : 7,550,192 – 7,550,887
695 bp 119 TFs 3 linked genes
This 695 bp open chromatin element is linked to VAMP3, PER3, and CAMTA1 and is bound by 119 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VAMP3 220.7 kb Distal Multiome
PER3 233.7 kb Distal Multiome
CAMTA1 765.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:7,545,192 – 7,555,887
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 238 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 287 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 321 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 267 bp overlap
ARNT 2 datasets
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 162 bp overlap
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 258 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
BRD2 4 datasets
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 51 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 332 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 283 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 178 bp overlap
BRD4 11 datasets
ChIP 402-91 GSE111253.BRD4.402-91 70 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 221 bp overlap
ChIP HCC1937 GSE124748.BRD4.HCC1937 145 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 54 bp overlap
ChIP Hep-G2 GSE123097.BRD4.Hep-G2 404 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 228 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 58 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 79 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 336 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 152 bp overlap
ChIP hESC GSE33281.BRD4.hESC 71 bp overlap
BRD9 2 datasets
ChIP Mel270 GSE124720.BRD9.Mel270 58 bp overlap
ChIP Mel270_DMSO GSE124720.BRD9.Mel270_DMSO 151 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 86 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 425 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 54 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 530 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 189 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 207 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 231 bp overlap
HES6 1 dataset
Motif DE_24h DE_24h-HES6_MA1493.1 10 bp overlap
HNF4A 2 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 282 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 695 bp overlap
INSM1 1 dataset
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
JUN 2 datasets
ChIP A549 ENCFF846DUV 118 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 315 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 123 bp overlap
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 274 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 437 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 404 bp overlap
KLF11 1 dataset
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF14 2 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
ChIP HEK293 ENCSR780ESQ.KLF14.HEK293 278 bp overlap
KLF16 1 dataset
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF17 2 datasets
Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 603 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 309 bp overlap
KLF5 1 dataset
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF9 4 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
ChIP HEK293 ENCFF588INF 345 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 274 bp overlap
KMT2A 1 dataset
ChIP MV4-11 GSE79899.KMT2A.MV4-11 290 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAZ 3 datasets
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
ChIP HEK293 ENCFF994GSG 208 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 102 bp overlap
MED1 6 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 428 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 504 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 482 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 445 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 426 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 57 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 207 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP GP5D GSE51234.MYC.GP5D 87 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 213 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 79 bp overlap
MYOG 1 dataset
Motif DE_24h DE_24h-MYOG_MA0500.3 8 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 316 bp overlap
NELFE 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 61 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 193 bp overlap
NHLH1 1 dataset
Motif DE_24h DE_24h-NHLH1_MA0048.3 9 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 159 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 116 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PATZ1 2 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 266 bp overlap
PAX1 1 dataset
Motif DE_24h DE_24h-PAX1_MA0779.2 16 bp overlap
PAX9 1 dataset
Motif DE_24h DE_24h-PAX9_MA0781.2 16 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 258 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 75 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 428 bp overlap
PKNOX2 1 dataset
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 449 bp overlap
POLR2A 6 datasets
ChIP HCT116 ENCFF508RDJ 126 bp overlap
ChIP HeLa-S3 ENCFF224LWS 172 bp overlap
ChIP HeLa-S3 ENCFF224LWS 695 bp overlap
ChIP HeLa-S3 ENCFF455YYQ 71 bp overlap
ChIP IMR-90 ENCFF672YWV 220 bp overlap
ChIP Peyer's patch ENCFF767HVN 417 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 331 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 247 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 203 bp overlap
PPARD 1 dataset
Motif DE_24h DE_24h-PPARD_MA1550.2 14 bp overlap
PRDM9 2 datasets
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap
RCOR1 1 dataset
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 129 bp overlap
RELA 3 datasets
ChIP 786-O GSE86092.RELA.786-O 86 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 287 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 147 bp overlap
RXRB 1 dataset
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD3 1 dataset
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 52 bp overlap
SMARCA4 2 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 216 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 364 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 191 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 417 bp overlap
ChIP GP5D GSE51234.SMC3.GP5D 58 bp overlap
SNAI1 1 dataset
Motif DE_24h DE_24h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SP1 3 datasets
Motif DE_24h DE_24h-SP1_MA0079.5 9 bp overlap
ChIP HEK293 GSE76494.SP1.HEK293 266 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SP3 4 datasets
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
ChIP HEK293 ENCFF087XLA 238 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 533 bp overlap
SP4 3 datasets
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
ChIP HEK293 GSE76494.SP4.HEK293 404 bp overlap
SP5 3 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 53 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 227 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 229 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 600 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
Motif DE_24h DE_24h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_24h DE_24h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP HCT-116 GSE108920.TEAD1.HCT-116 383 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 151 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_24h DE_24h-TGIF2LY_MA1572.1 12 bp overlap
THRB 1 dataset
Motif DE_24h DE_24h-THRB_MA1574.2 13 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 144 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 161 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 185 bp overlap
ZBTB26 3 datasets
ChIP HEK293 ENCFF752POA 292 bp overlap
ChIP HEK293 ENCFF752TCU 536 bp overlap
ChIP HEK293 ENCFF752TCU 683 bp overlap
ZEB1 9 datasets
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 252 bp overlap
ChIP HEK293 ENCFF007TAP 425 bp overlap
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 246 bp overlap
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 133 bp overlap
ChIP Hep-G2 ENCSR000BVN.ZEB1.Hep-G2 129 bp overlap
ChIP MIA-PaCa-2 GSE88734.ZEB1.MIA-PaCa-2 653 bp overlap
ChIP MIA-PaCa-2_WT GSE88734.ZEB1.MIA-PaCa-2_WT 441 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 183 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 392 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 496 bp overlap
ZNF148 1 dataset
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF263 3 datasets
Motif DE_24h DE_24h-ZNF263_MA0528.3 7 bp overlap
ChIP HEK293 ENCFF336CWQ 105 bp overlap
ChIP HEK293 ENCFF336CWQ 331 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF460 1 dataset
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 165 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 269 bp overlap
ZNF740 1 dataset
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
ZNF784 1 dataset
Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap