chr3 : 109,338,868 – 109,339,179
311 bp 5 TFs 2 linked genes
This 311 bp open chromatin element is linked to ENSG00000289358 and DPPA4 and is bound by AFF4, RXRA, SMAD2-3, SP1, and YY1.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000289358 1.1 kb Proximal Proximity
DPPA4 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:109,333,868 – 109,344,179
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
5 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 74 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 92 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 152 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 87 bp overlap
YY1 2 datasets
ChIP liver ENCFF400MBC 71 bp overlap
ChIP liver ENCFF400MBC 311 bp overlap
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