chr3 : 128,160,456 – 128,161,161
705 bp 21 TFs 3 linked genes
This 705 bp open chromatin element is linked to EEFSEC, RUVBL1, and SEC61A1 and is bound by 21 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EEFSEC 7.0 kb Proximal Proximity
RUVBL1 37.0 kb Distal Multiome
SEC61A1 108.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:128,155,456 – 128,166,161
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 177 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 117 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 209 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 455 bp overlap
BCL11A 1 dataset
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 90 bp overlap
BRD4 2 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 501 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 321 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 321 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 180 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 705 bp overlap
ChIP DE DE-FOXA2-2 647 bp overlap
GATA1 5 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 151 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 289 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 234 bp overlap
ChIP erythroblast ENCFF867JAR 605 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 476 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 221 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 705 bp overlap
ChIP DE DE-GATA4-2 705 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 321 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 705 bp overlap
ChIP DE DE-GATA6-2 705 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 603 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 530 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 193 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 161 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 127 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 705 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 578 bp overlap
TAL1 3 datasets
ChIP CD34 GSE52924.TAL1.CD34 183 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 161 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 238 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 130 bp overlap