chr3 : 129,602,230 – 129,602,769
539 bp 70 TFs 6 linked genes
This 539 bp open chromatin element is linked to 6 target genes and is bound by 70 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PLXND1 3.9 kb Proximal Proximity
IFT122 162.4 kb Distal Multiome
MBD4 162.5 kb Distal Multiome
ENSG00000290993 203.1 kb Distal Multiome
H1-10 286.2 kb Distal Multiome
TMCC1 291.1 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:129,597,230 – 129,607,769
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K-562 ENCSR440VKE.ADNP.K-562 58 bp overlap
ChIP K562 ENCFF492SKF 274 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 179 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 296 bp overlap
ASCL1 3 datasets
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 348 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 82 bp overlap
CBX3 1 dataset
ChIP K562 ENCFF410AQU 100 bp overlap
CHD4 2 datasets
ChIP HepG2 ENCFF615GUT 226 bp overlap
ChIP K562 ENCFF933NKI 97 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 309 bp overlap
Dmrt1 1 dataset
Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap
EBF1 1 dataset
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
EOMES 4 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
ESRRA 7 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 168 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 128 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 106 bp overlap
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 109 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 67 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 76 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 87 bp overlap
ETS1 7 datasets
ChIP HUVEC-C GSE109625.ETS1.HUVEC-C 182 bp overlap
ChIP HUVEC-C GSE93030.ETS1.HUVEC-C 182 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 228 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 173 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 224 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 228 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 173 bp overlap
EZH2 1 dataset
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 286 bp overlap
Ebf4 1 dataset
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FIGLA 3 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 329 bp overlap
ChIP DE DE-FOXA2-2 345 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 274 bp overlap
ChIP DE DE-GATA4-2 182 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 259 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 228 bp overlap
HDAC2 3 datasets
ChIP A549 ENCFF195CCI 62 bp overlap
ChIP K562 ENCFF744ALD 62 bp overlap
ChIP K562 ENCFF919OMP 96 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 137 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 407 bp overlap
KAT7 2 datasets
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 240 bp overlap
ChIP WTC11 ENCFF581TPB 450 bp overlap
KDM1A 7 datasets
ChIP A-549 ENCSR639GWS.KDM1A.A-549 70 bp overlap
ChIP A549 ENCFF633QSB 86 bp overlap
ChIP HepG2 ENCFF240UWG 90 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 123 bp overlap
ChIP K562 ENCFF133OLU 95 bp overlap
ChIP K562 ENCFF934ZRG 101 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 60 bp overlap
KLF4 1 dataset
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 539 bp overlap
NFYB 1 dataset
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 283 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 245 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 206 bp overlap
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 187 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 153 bp overlap
RCOR2 1 dataset
ChIP HepG2 ENCFF310RFX 120 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 224 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 62 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 432 bp overlap
SMARCA5 2 datasets
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 60 bp overlap
ChIP K562 ENCFF936KHY 68 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 385 bp overlap
SNAI1 3 datasets
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 405 bp overlap
SP1 1 dataset
ChIP HepG2 ENCFF458MVB 84 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
TBX1 3 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TCF12 3 datasets
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 3 datasets
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 79 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 337 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 348 bp overlap
THAP1 1 dataset
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
THRA 3 datasets
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
Motif DE_72h DE_72h-THRA_MA1969.2 18 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 158 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 332 bp overlap
ZEB1 4 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ChIP RKO GSE88734.ZEB1.RKO 292 bp overlap
ZFP57 1 dataset
Motif DE_48h DE_48h-ZFP57_MA1583.2 7 bp overlap
ZMYM3 3 datasets
ChIP HepG2 ENCFF408KTI 75 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 91 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 52 bp overlap
ZNF16 1 dataset
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF410 3 datasets
Motif DE_48h DE_48h-ZNF410_MA0752.2 16 bp overlap
Motif DE_60h DE_60h-ZNF410_MA0752.2 16 bp overlap
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF444 1 dataset
ChIP MCF-7 ENCFF602QFR 73 bp overlap
ZNF708 1 dataset
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
ZNF788P 1 dataset
ChIP HepG2 ENCFF689IBZ 127 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap