chr3 : 130,095,749 – 130,096,324
575 bp 61 TFs 2 linked genes
This 575 bp open chromatin element is linked to LINC02014 and ALG1L2 and is bound by 61 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02014 1.4 kb Proximal Proximity
ALG1L2 1.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:130,090,749 – 130,101,324
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 575 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 430 bp overlap
Bcl11B 1 dataset
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
CTCF 7 datasets
Motif DE_36h DE_36h-CTCF_MA1929.2 31 bp overlap
ChIP HepG2 ENCFF757EKU 300 bp overlap
ChIP Panc1 ENCFF056JQX 398 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 163 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 219 bp overlap
ChIP heart right ventricle ENCFF577TID 282 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 207 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 73 bp overlap
ChIP BLaER1 ENCFF093OYK 329 bp overlap
ChIP BLaER1 ENCFF364PUR 259 bp overlap
E2F4 1 dataset
ChIP HepG2 ENCFF311TOD 471 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 162 bp overlap
Ebf4 1 dataset
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 163 bp overlap
KLF1 1 dataset
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
KLF13 1 dataset
Motif DE_36h DE_36h-KLF13_MA0657.2 17 bp overlap
KLF16 2 datasets
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
KLF2 1 dataset
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_36h DE_36h-KLF3_MA1516.2 10 bp overlap
KLF4 1 dataset
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_36h DE_36h-KLF6_MA1517.2 9 bp overlap
KLF9 2 datasets
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
LIN54 1 dataset
ChIP HepG2 ENCFF662XDE 575 bp overlap
MAX 2 datasets
ChIP HepG2 ENCFF507HCX 465 bp overlap
ChIP HepG2 ENCFF507HCX 255 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 540 bp overlap
NFIL3 1 dataset
Motif DE_36h DE_36h-NFIL3_MA0025.3 9 bp overlap
NKX2-3 1 dataset
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
NR2F6 1 dataset
Motif DE_36h DE_36h-NR2F6_MA1539.1 15 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 399 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 258 bp overlap
PRDM10 1 dataset
ChIP HepG2 ENCFF324FNA 521 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 263 bp overlap
RUNX2 2 datasets
Motif DE_36h DE_36h-RUNX2_MA0511.2 9 bp overlap
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 307 bp overlap
RUNX3 2 datasets
Motif DE_36h DE_36h-RUNX3_MA0684.3 8 bp overlap
ChIP GM12878 ENCFF395WHA 187 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 290 bp overlap
SP3 1 dataset
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_36h DE_36h-SP8_MA0747.2 11 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 332 bp overlap
TFAP2A 1 dataset
Motif DE_36h DE_36h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_36h DE_36h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif DE_36h DE_36h-TFAP2C_MA0815.1 13 bp overlap
TP53 4 datasets
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 262 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 205 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 329 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 195 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 291 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 296 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 201 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 191 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 184 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 190 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 207 bp overlap
Tfcp2l1 1 dataset
Motif DE_36h DE_36h-Tfcp2l1_MA0145.2 14 bp overlap
VEZF1 1 dataset
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 499 bp overlap
ZIC5 1 dataset
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF263 1 dataset
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCFF764ZIC 104 bp overlap
ZNF574 1 dataset
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 525 bp overlap
ZNF772 2 datasets
ChIP HepG2 ENCFF728OGE 537 bp overlap
ChIP HepG2 ENCFF728OGE 358 bp overlap
ZNF788P 1 dataset
ChIP HepG2 ENCFF689IBZ 417 bp overlap
ZSCAN29 1 dataset
ChIP HepG2 ENCFF212SBM 562 bp overlap
ZSCAN31 1 dataset
ChIP HepG2 ENCFF066FRL 455 bp overlap