chr1 : 64,517,506 – 64,518,244
738 bp 61 TFs 2 linked genes
This 738 bp open chromatin element is linked to CACHD1 and RAVER2 and is bound by 61 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CACHD1 47.6 kb Distal Multiome
RAVER2 227.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:64,512,506 – 64,523,244
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ATF2 4 datasets
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 431 bp overlap
ChIP HepG2 ENCFF955VER 381 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 205 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 102 bp overlap
BRCA1 1 dataset
ChIP K-562 ENCSR223MLH.BRCA1.K-562 234 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 117 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 121 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 51 bp overlap
CEBPA 1 dataset
ChIP SGBS GSE41629.CEBPA.SGBS 128 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 147 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 426 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 545 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 221 bp overlap
FOXA1 1 dataset
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 71 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 738 bp overlap
ChIP DE DE-FOXA2-2 703 bp overlap
FOXM1 2 datasets
ChIP SK-N-SH ENCFF404RGX 81 bp overlap
ChIP SK-N-SH ENCFF404RGX 281 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 714 bp overlap
ChIP DE DE-GATA4-2 738 bp overlap
ChIP foregut GSE117136.GATA4.foregut 286 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 738 bp overlap
ChIP DE DE-GATA6-2 738 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 601 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 549 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 534 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 607 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 647 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 657 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 536 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 277 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 94 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 434 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 381 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 392 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 571 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 268 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 98 bp overlap
MED1 8 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 121 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 97 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 133 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 119 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 134 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 132 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 54 bp overlap
ChIP hMSC-TERT4_undifferentiated GSE113253.MED1.hMSC-TERT4_undifferentiated 93 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 204 bp overlap
MYCN 4 datasets
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 200 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 66 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 68 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 200 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 294 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 247 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 738 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 381 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 264 bp overlap
ChIP hESC GSE18292.NANOG.hESC 165 bp overlap
NFIA 1 dataset
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_60h DE_60h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 298 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 316 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 151 bp overlap
NR6A1 1 dataset
Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 560 bp overlap
ONECUT1 2 datasets
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_72h DE_72h-ONECUT1_MA0679.3 9 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 533 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 254 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 271 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 87 bp overlap
REST 3 datasets
ChIP neural ENCSR000BTV.REST.neural 215 bp overlap
ChIP neural cell ENCFF882LXX 505 bp overlap
ChIP neural cell ENCFF882LXX 302 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 225 bp overlap
ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 249 bp overlap
RXRA 1 dataset
ChIP SK-N-SH ENCFF893DLM 87 bp overlap
Rarg 2 datasets
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap
Runx1 1 dataset
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 686 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 554 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 425 bp overlap
SMAD3 3 datasets
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 117 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 124 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 239 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 52 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 140 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 387 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 300 bp overlap
SMARCC1 2 datasets
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 62 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 654 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 521 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 528 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 127 bp overlap
SS18 6 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 738 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 738 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 738 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 276 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 165 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 609 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 385 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 196 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 198 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 374 bp overlap
TWIST1 3 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 54 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 85 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 54 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 330 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 346 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 185 bp overlap