chr3 : 170,417,378 – 170,417,818
440 bp 21 TFs 2 linked genes
This 440 bp open chromatin element is linked to CLDN11 and ENSG00000285218 and is bound by 21 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CLDN11 1.0 kb Proximal Proximity
ENSG00000285218 1.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:170,412,378 – 170,422,818
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 140 bp overlap
ChIP K562 ENCFF403WPG 334 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 282 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 440 bp overlap
ChIP DE DE-FOXA2-2 440 bp overlap
GATA1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 81 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000DKA.GATA2.K-562 161 bp overlap
GATA3 2 datasets
ChIP T-47D GSE51274.GATA3.T-47D 137 bp overlap
ChIP T47D-A1-2_EtOH GSE112491.GATA3.T47D-A1-2_EtOH 201 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 224 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 183 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 161 bp overlap
ChIP DE DE-GATA4-1 421 bp overlap
ChIP DE DE-GATA4-2 440 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 419 bp overlap
ChIP DE DE-GATA6-2 440 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 402 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 440 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 440 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 440 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 440 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 440 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 392 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 116 bp overlap
ChIP K562 ENCFF348IBL 154 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 64 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 248 bp overlap
ChIP K562 ENCFF320GSD 57 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 242 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 209 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 68 bp overlap
ChIP K562 ENCFF286KMN 123 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 158 bp overlap
ChIP K562 ENCFF236IUS 79 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 278 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 375 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 360 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 368 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 266 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 440 bp overlap
YY1 1 dataset
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 102 bp overlap