chr3 : 184,795,215 – 184,795,741
526 bp 80 TFs 4 linked genes
This 526 bp open chromatin element is linked to 4 target genes and is bound by 80 transcription factors.
Linked Genes
4 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
VPS8 16.7 kb Distal Multiome
ENSG00000272970 83.2 kb Distal Multiome
MAGEF1 83.4 kb Distal Multiome
EPHB3 233.7 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:184,790,215 – 184,800,741
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 147 bp overlap
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 222 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF521IZR 395 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 250 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 311 bp overlap
BRD4 5 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 214 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 145 bp overlap
ChIP SEM GSE83671.BRD4.SEM 455 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 286 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 264 bp overlap
CDK9 3 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 188 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 193 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 181 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 207 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 300 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 137 bp overlap
CHD8 2 datasets
ChIP T-47D GSE62428.CHD8.T-47D 161 bp overlap
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 203 bp overlap
CTCF 4 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 408 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 277 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 274 bp overlap
ChIP U-937 ERP008568.CTCF.U-937 232 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 366 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 266 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 228 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000AUQ.EP300.WA01 158 bp overlap
ERG 2 datasets
ChIP SEM GSE117864.ERG.SEM 361 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ESR1 6 datasets
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 85 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 146 bp overlap
ChIP Ishikawa_ETV4-KO2_Rescue GSE129803.ESR1.Ishikawa_ETV4-KO2_Rescue 132 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 240 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 262 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 326 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 227 bp overlap
EZH2 1 dataset
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 290 bp overlap
FLI1 2 datasets
ChIP SEM GSE117864.FLI1.SEM 139 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 320 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 304 bp overlap
ChIP DE DE-FOXA2-2 287 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 453 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 308 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 282 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 237 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 201 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 193 bp overlap
HOXA9 1 dataset
ChIP SEM GSE38339.HOXA9.SEM 62 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 395 bp overlap
JMJD1C 2 datasets
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 192 bp overlap
ChIP NB4 GSE63484.JMJD1C.NB4 148 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 292 bp overlap
KDM1A 6 datasets
ChIP K-562 ENCSR908CMW.KDM1A.K-562 246 bp overlap
ChIP K-562 ENCSR000ATX.KDM1A.K-562 140 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 251 bp overlap
ChIP K562 ENCFF128TYE 287 bp overlap
ChIP K562 ENCFF934ZRG 325 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 526 bp overlap
KMT2B 1 dataset
ChIP AML_OG86 GSE112074.KMT2B.AML_OG86 344 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 219 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 224 bp overlap
LMO2 2 datasets
ChIP Kasumi-1 GSE43834.LMO2.Kasumi-1 154 bp overlap
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 210 bp overlap
MAX 1 dataset
ChIP P493-6 GSE36354.MAX.P493-6 180 bp overlap
MAZ 4 datasets
ChIP HEK293 ENCFF994GSG 213 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 210 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 207 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 147 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 526 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 351 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 198 bp overlap
MEIS1 1 dataset
ChIP SEM GSE38339.MEIS1.SEM 151 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 122 bp overlap
MYB 2 datasets
ChIP SEM GSE117864.MYB.SEM 526 bp overlap
ChIP THP-1 GSE90769.MYB.THP-1 158 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 372 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 186 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 318 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 133 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 206 bp overlap
NR3C1 15 datasets
ChIP A-549 ENCSR000BJR.NR3C1.A-549 183 bp overlap
ChIP A-549 ENCSR000BHF.NR3C1.A-549 212 bp overlap
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 526 bp overlap
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 297 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 379 bp overlap
ChIP RS4-11_DEX GSE71616.NR3C1.RS4-11_DEX 247 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 178 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 504 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 278 bp overlap
ChIP THP-1_Dex GSE99887.NR3C1.THP-1_Dex 156 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 165 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 432 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 400 bp overlap
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 282 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 401 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 526 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 197 bp overlap
ChIP K562 ENCFF286KMN 117 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 212 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 170 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 341 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 318 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 227 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 227 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 466 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 323 bp overlap
ChIP neural cell ENCFF604SPB 67 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 104 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 85 bp overlap
RUNX1 5 datasets
ChIP 697 GSE138031.RUNX1.697 332 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 315 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 240 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 240 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 438 bp overlap
RUNX1-RUNX1T1 1 dataset
ChIP AML GSE131939.RUNX1-RUNX1T1.AML 155 bp overlap
RUNX1T1 6 datasets
ChIP CD34 GSE80773.RUNX1T1.CD34 402 bp overlap
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 465 bp overlap
ChIP Kasumi-1 GSE43834.RUNX1T1.Kasumi-1 321 bp overlap
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 237 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 148 bp overlap
ChIP Kasumi-1_E2 GSE102697.RUNX1T1.Kasumi-1_E2 153 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 428 bp overlap
RUVBL1 1 dataset
ChIP Hep-G2 GSE97661.RUVBL1.Hep-G2 151 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 228 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 451 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 446 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 458 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 526 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 470 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 141 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 310 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 519 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 526 bp overlap
SOX2 4 datasets
ChIP LK2 GSE137459.SOX2.LK2 297 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 383 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 440 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 310 bp overlap
STAT3 1 dataset
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 128 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 254 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 132 bp overlap
TCF3 3 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 526 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 526 bp overlap
ChIP SEM GSE85988.TCF3.SEM 526 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 114 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 167 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 155 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 309 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 130 bp overlap
ZNF148 2 datasets
ChIP K-562 GSE121133.ZNF148.K-562 376 bp overlap
ChIP K-562 ENCSR018MSO.ZNF148.K-562 122 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 310 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 292 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 334 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 213 bp overlap
ZNF444 2 datasets
ChIP MCF-7 ENCFF602QFR 291 bp overlap
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 280 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 225 bp overlap
ZNF512 3 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 160 bp overlap
ChIP K562 ENCFF601EMZ 393 bp overlap
ChIP WTC11 ENCFF086TTM 222 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 69 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 109 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 166 bp overlap
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