chr3 : 185,249,926 – 185,250,485
559 bp 51 TFs 3 linked genes
This 559 bp open chromatin element is linked to EHHADH, MAP3K13, and TMEM41A and is bound by 51 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EHHADH 3.6 kb Proximal Proximity
MAP3K13 32.9 kb Distal Multiome
TMEM41A 248.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:185,244,926 – 185,255,485
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AR 5 datasets
ChIP VCaP GSE148358.AR.VCaP 208 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 125 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 147 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 143 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 164 bp overlap
ARID1B 1 dataset
ChIP Hep-G2 GSE69566.ARID1B.Hep-G2 294 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 279 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 162 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 183 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 224 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 273 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 357 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 241 bp overlap
ChIP DE DE-FOXA2-1 429 bp overlap
ChIP DE DE-FOXA2-2 467 bp overlap
GATA1 3 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 124 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 110 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 218 bp overlap
GATA2 9 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 348 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF905PYM 350 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 152 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 379 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 313 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 257 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 387 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 326 bp overlap
GATA3 5 datasets
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
ChIP SK-N-SH ENCFF040SSB 172 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 442 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 131 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 61 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 77 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 72 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 219 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 366 bp overlap
ChIP DE DE-GATA4-1 558 bp overlap
ChIP DE DE-GATA4-2 559 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 483 bp overlap
ChIP foregut GSE117136.GATA4.foregut 513 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 493 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 478 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 151 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 260 bp overlap
ChIP DE DE-GATA6-1 550 bp overlap
ChIP DE DE-GATA6-2 559 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 369 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 559 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 368 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 559 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 559 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 395 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 318 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 535 bp overlap
ChIP foregut GSE117136.GATA6.foregut 343 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 301 bp overlap
GMEB1 1 dataset
ChIP HepG2 ENCFF434UDC 315 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 112 bp overlap
HNF1B 2 datasets
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 129 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 97 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 431 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 112 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 425 bp overlap
KDM1A 4 datasets
ChIP K-562 ENCSR360HRA.KDM1A.K-562 130 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 120 bp overlap
ChIP K562 ENCFF128TYE 202 bp overlap
ChIP K562 ENCFF133OLU 187 bp overlap
LIN54 1 dataset
ChIP HepG2 ENCFF662XDE 287 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 290 bp overlap
MED1 1 dataset
ChIP SGBS_TNF GSE64233.MED1.SGBS_TNF 131 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 138 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 94 bp overlap
PPARG 2 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 70 bp overlap
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 163 bp overlap
RAD21 1 dataset
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 301 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 152 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 158 bp overlap
RXRA 1 dataset
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 71 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 147 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 559 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 356 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 323 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 523 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 516 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 251 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 247 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 76 bp overlap
SMARCB1 2 datasets
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 242 bp overlap
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 119 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 349 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 329 bp overlap
SPI1 2 datasets
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 142 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 124 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 246 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 65 bp overlap
ChIP HepG2 ENCFF661PNM 51 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 82 bp overlap
TEAD4 2 datasets
ChIP T-47D_E2 GSE125594.TEAD4.T-47D_E2 121 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 101 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 172 bp overlap
VDR 1 dataset
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 261 bp overlap
YY1AP1 2 datasets
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 219 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 112 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 133 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 298 bp overlap
ZNF75A 1 dataset
ChIP K562 ENCFF410JIO 295 bp overlap