chr3 : 186,469,999 – 186,470,758
759 bp 31 TFs 2 linked genes
This 759 bp open chromatin element is linked to TBCCD1 and DNAJB11 and is bound by 31 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TBCCD1 97.0 kb Distal Multiome
DNAJB11 100.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:186,464,999 – 186,475,758
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP BE2C GSE80151.BRD4.BE2C 215 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 215 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 177 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 134 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 578 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 230 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 267 bp overlap
EZH2 1 dataset
ChIP PC-9 ENCSR793USK.EZH2.PC-9 190 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 642 bp overlap
ChIP DE DE-FOXA2-2 610 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 403 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 382 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 145 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 157 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 679 bp overlap
ChIP DE DE-GATA4-2 759 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 382 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 261 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 693 bp overlap
ChIP DE DE-GATA6-2 759 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 759 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 345 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 647 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 356 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 227 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 215 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 162 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 384 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 207 bp overlap
MYCN 5 datasets
ChIP BE2C GSE80151.MYCN.BE2C 198 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 267 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 137 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 385 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 194 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 159 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 201 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 249 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 195 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 546 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 255 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 316 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 153 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 759 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 606 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 380 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 579 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 735 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 528 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 528 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 104 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 317 bp overlap