chr3 : 186,781,841 – 186,782,091
250 bp 30 TFs 3 linked genes
This 250 bp open chromatin element is linked to EIF4A2, ENSG00000263826, and GPS2P2 and is bound by 30 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
EIF4A2 1.5 kb Proximal Proximity
ENSG00000263826 2.1 kb Proximal Proximity
GPS2P2 9.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:186,776,841 – 186,787,091
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
ESR1 1 dataset
ChIP ZR751 ERP000783.ESR1.ZR751 160 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 206 bp overlap
FOXA1 7 datasets
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 218 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 167 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 250 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 222 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 216 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 232 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 190 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 250 bp overlap
ChIP DE DE-FOXA2-2 250 bp overlap
GATA3 2 datasets
ChIP T-47D GSE51274.GATA3.T-47D 243 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 144 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 214 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 171 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 250 bp overlap
ChIP DE DE-GATA4-2 250 bp overlap
ChIP foregut GSE117136.GATA4.foregut 250 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 250 bp overlap
ChIP DE DE-GATA6-2 250 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 250 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 250 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 250 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 250 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 250 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 250 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 183 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 224 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 112 bp overlap
MEN1 3 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 151 bp overlap
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 240 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 250 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 250 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 250 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 200 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 109 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 107 bp overlap
PGR 1 dataset
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 227 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 50 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 136 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 196 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 149 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 250 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 250 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 250 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 250 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 250 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 250 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 250 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 249 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 219 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 169 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 250 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 185 bp overlap
TBP 1 dataset
ChIP hESC_2h GSE122298.TBP.hESC_2h 202 bp overlap
TLE3 1 dataset
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 125 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 116 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 99 bp overlap