chr3 : 195,297,445 – 195,298,276
831 bp 66 TFs 3 linked genes
This 831 bp open chromatin element is linked to XXYLT1, ACAP2, and PPP1R2 and is bound by 66 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
XXYLT1 26.8 kb Distal Multiome
ACAP2 145.1 kb Distal Multiome
PPP1R2 245.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:195,292,445 – 195,303,276
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 43 datasets
ChIP DU145_FOXA1 GSE47987.AR.DU145_FOXA1 131 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 164 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 201 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 201 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 142 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 275 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 245 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 183 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 196 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 187 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 177 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 265 bp overlap
ChIP VCaP GSE148358.AR.VCaP 220 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 467 bp overlap
ChIP VCaP-LTAD_DHT_1nM GSE94577.AR.VCaP-LTAD_DHT_1nM 323 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 264 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 358 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 287 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 507 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 460 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 720 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 437 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 247 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 321 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 240 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 165 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 211 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 212 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 384 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 350 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 412 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 289 bp overlap
ChIP VCaP_Veh GSE125245.AR.VCaP_Veh 176 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 202 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 214 bp overlap
ChIP prostate GSE56288.AR.prostate 144 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 133 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 250 bp overlap
ChIP prostate_1592_T GSE130408.AR.prostate_1592_T 174 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 264 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 299 bp overlap
ChIP prostate_1853_T GSE130408.AR.prostate_1853_T 203 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 226 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 343 bp overlap
ChIP K562 ENCFF938UXQ 273 bp overlap
BARX2 1 dataset
Motif DE_72h DE_72h-BARX2_MA1471.2 9 bp overlap
BCL11A 1 dataset
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 53 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 245 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 440 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 199 bp overlap
ChIP K562 ENCFF963TXY 327 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 274 bp overlap
ChIP K562 ENCFF673OEZ 249 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 116 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 151 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DMRTA1 1 dataset
Motif DE_72h DE_72h-DMRTA1_MA1707.2 10 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 240 bp overlap
Dmrt1 1 dataset
Motif DE_72h DE_72h-Dmrt1_MA1603.2 9 bp overlap
EBF1 1 dataset
ChIP LCL GSE75503.EBF1.LCL 57 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 334 bp overlap
ChIP hESC GSE26097.EOMES.hESC 157 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 142 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 11 datasets
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 250 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 267 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 186 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 226 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 105 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 271 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 296 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 208 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 259 bp overlap
ChIP prostate_2483 GSE130408.FOXA1.prostate_2483 236 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 215 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 225 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 182 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 171 bp overlap
ChIP DE DE-FOXA2-1 831 bp overlap
ChIP DE DE-FOXA2-2 831 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 214 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 171 bp overlap
GATA1 9 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 233 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 171 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 147 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 246 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 188 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 287 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 275 bp overlap
ChIP K562 ENCFF094CMK 221 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 242 bp overlap
GATA2 2 datasets
ChIP VCaP GSE125236.GATA2.VCaP 168 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 180 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 291 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 242 bp overlap
ChIP DE DE-GATA4-1 831 bp overlap
ChIP DE DE-GATA4-2 831 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 806 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 308 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 321 bp overlap
GATA6 11 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 262 bp overlap
ChIP DE DE-GATA6-1 831 bp overlap
ChIP DE DE-GATA6-2 831 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 266 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 831 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 302 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 246 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 831 bp overlap
ChIP foregut GSE117136.GATA6.foregut 799 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 262 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 570 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 254 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 436 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 137 bp overlap
HOXB13 3 datasets
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 183 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 250 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 154 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 325 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 349 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 242 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 228 bp overlap
NCOR1 2 datasets
ChIP K-562 ENCSR910JAI.NCOR1.K-562 242 bp overlap
ChIP K562 ENCFF788MPU 333 bp overlap
NFIC 1 dataset
ChIP K-562 ENCSR796ITY.NFIC.K-562 245 bp overlap
NR3C1 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 260 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 117 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 165 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 275 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 591 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 298 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 831 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 715 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 787 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 316 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 241 bp overlap
SNAI2 1 dataset
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX15 1 dataset
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 795 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 811 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 290 bp overlap
ChIP K562 ENCFF059YCJ 236 bp overlap
Sox11 1 dataset
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 298 bp overlap
TAL1 13 datasets
ChIP CD34 GSE52924.TAL1.CD34 99 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 92 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 236 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 264 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 212 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 253 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 278 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 291 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 279 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 198 bp overlap
ChIP K562 ENCFF620GMX 156 bp overlap
ChIP K562 ENCFF661CCK 269 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 177 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 365 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 152 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 331 bp overlap
TP63 1 dataset
Motif DE_72h DE_72h-TP63_MA0525.2 18 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 220 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 224 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 242 bp overlap
ZSCAN29 1 dataset
Motif DE_72h DE_72h-ZSCAN29_MA1602.2 11 bp overlap