chr4 : 14,764,883 – 14,765,959
1,076 bp 46 TFs 2 linked genes
This 1.1 kb open chromatin element is linked to LINC00504 and CPEB2 and is bound by 46 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00504 122.8 kb Distal Multiome
CPEB2 237.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:14,759,883 – 14,770,959
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
CEBPA 2 datasets
Motif DE_48h DE_48h-CEBPA_MA0102.5 10 bp overlap
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
CEBPD 2 datasets
Motif DE_48h DE_48h-CEBPD_MA0836.3 8 bp overlap
Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap
DBP 2 datasets
Motif DE_48h DE_48h-DBP_MA0639.2 10 bp overlap
Motif DE_60h DE_60h-DBP_MA0639.2 10 bp overlap
DMRT3 2 datasets
Motif DE_48h DE_48h-DMRT3_MA0610.2 7 bp overlap
Motif DE_60h DE_60h-DMRT3_MA0610.2 7 bp overlap
DMRTC2 2 datasets
Motif DE_48h DE_48h-DMRTC2_MA1479.2 11 bp overlap
Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 611 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 883 bp overlap
ChIP DE DE-FOXA2-2 930 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 1043 bp overlap
ChIP DE DE-GATA4-2 963 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 901 bp overlap
ChIP DE DE-GATA6-2 893 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 448 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 603 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1054 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 713 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 505 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 760 bp overlap
HLF 2 datasets
Motif DE_48h DE_48h-HLF_MA0043.4 9 bp overlap
Motif DE_60h DE_60h-HLF_MA0043.4 9 bp overlap
HOXA4 2 datasets
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXB4 2 datasets
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
HSF1 3 datasets
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 279 bp overlap
HSF2 2 datasets
Motif DE_48h DE_48h-HSF2_MA0770.1 13 bp overlap
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_48h DE_48h-HSF4_MA0771.1 13 bp overlap
Motif DE_60h DE_60h-HSF4_MA0771.1 13 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_48h DE_48h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 414 bp overlap
MAF 1 dataset
Motif DE_48h DE_48h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_48h DE_48h-MAFA_MA1521.2 13 bp overlap
MGA::EVX1 2 datasets
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 140 bp overlap
NFIL3 2 datasets
Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
NKX2-4 2 datasets
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
POU6F1 2 datasets
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
PRDM1 2 datasets
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
Prdm14 2 datasets
Motif DE_48h DE_48h-Prdm14_MA1998.2 8 bp overlap
Motif DE_60h DE_60h-Prdm14_MA1998.2 8 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 187 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 860 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 575 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 423 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 870 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 1055 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 198 bp overlap
SOX10 2 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 578 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 634 bp overlap
SOX4 1 dataset
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Six3 2 datasets
Motif DE_48h DE_48h-Six3_MA0631.2 11 bp overlap
Motif DE_60h DE_60h-Six3_MA0631.2 11 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Sox6 1 dataset
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 338 bp overlap
TEAD1 2 datasets
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
TEAD4 2 datasets
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
ZBTB26 2 datasets
Motif DE_48h DE_48h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZNF184 2 datasets
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF558 2 datasets
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF684 4 datasets
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
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