chr1 : 72,281,236 – 72,281,554
318 bp 43 TFs 2 linked genes
This 318 bp open chromatin element is linked to NEGR1 and LINC02796 and is bound by 43 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NEGR1 984 bp At TSS Proximity
LINC02796 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:72,276,236 – 72,286,554
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
BRD2 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 318 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 318 bp overlap
BRD4 8 datasets
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 318 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 314 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 179 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 277 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 254 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 233 bp overlap
ChIP THP-1_iBET GSE138084.BRD4.THP-1_iBET 273 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 230 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_DMSO GSE116879.BRD9.MDA-MB-231_DMSO 238 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 318 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 173 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 280 bp overlap
CTCF 4 datasets
ChIP B cell ENCFF500PZO 284 bp overlap
ChIP astrocyte ENCFF558APA 282 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 274 bp overlap
ChIP sigmoid colon ENCFF219LPW 186 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 318 bp overlap
FOXA1 3 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 174 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 209 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 192 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 126 bp overlap
IRF4 5 datasets
ChIP B-cell GSE142493.IRF4.B-cell 225 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 293 bp overlap
ChIP OCI-Ly3 GSE56857.IRF4.OCI-Ly3 242 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 232 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 169 bp overlap
IRF5 1 dataset
ChIP GM12878 ENCSR976TBC.IRF5.GM12878 217 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 215 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 142 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 132 bp overlap
KMT2A 3 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 262 bp overlap
ChIP L826 GSE83671.KMT2A.L826 185 bp overlap
ChIP RS4-11 GSE38403.KMT2A.RS4-11 294 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 140 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 216 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 248 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 287 bp overlap
MYC 2 datasets
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 157 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 90 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 144 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 297 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 151 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 305 bp overlap
ChIP sigmoid colon ENCFF748YVT 318 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 166 bp overlap
RAD21 1 dataset
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 223 bp overlap
RBPJ 1 dataset
ChIP THP-6_shCtrl GSE138516.RBPJ.THP-6_shCtrl 248 bp overlap
RNF2 1 dataset
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 301 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 270 bp overlap
SPI1 21 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 246 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 214 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 179 bp overlap
ChIP DC GSE123347.SPI1.DC 142 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 318 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 178 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 271 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 198 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 249 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 269 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 198 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 183 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 280 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 260 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 239 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 276 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 181 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 215 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 111 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 134 bp overlap
SPIB 3 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 204 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 267 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 318 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 261 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 220 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 257 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 158 bp overlap
STAT3 3 datasets
ChIP OCI-Ly3 GSE50723.STAT3.OCI-Ly3 126 bp overlap
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 135 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 200 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 182 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 246 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 247 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 191 bp overlap
ZNF512B 2 datasets
ChIP MCF-7 ENCSR761LRR.ZNF512B.MCF-7 127 bp overlap
ChIP MCF-7 ENCSR555DCF.ZNF512B.MCF-7 112 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 279 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 211 bp overlap