chr4 : 40,874,407 – 40,874,886
479 bp 73 TFs 2 linked genes
This 479 bp open chromatin element is linked to NSUN7 and RBM47 and is bound by 73 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NSUN7 124.7 kb Distal Multiome
RBM47 244.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:40,869,407 – 40,879,886
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
Ar 1 dataset
Motif DE_48h DE_48h-Ar_MA0007.4 16 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 315 bp overlap
DMRT3 1 dataset
Motif DE_48h DE_48h-DMRT3_MA0610.2 7 bp overlap
DMRTA1 1 dataset
Motif DE_48h DE_48h-DMRTA1_MA1707.2 10 bp overlap
Dmrt1 1 dataset
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 285 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 382 bp overlap
ChIP DE DE-FOXA2-2 479 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 182 bp overlap
FOXB1 3 datasets
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 3 datasets
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
GATA2 3 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 370 bp overlap
ChIP DE DE-GATA4-2 479 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 291 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 248 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 399 bp overlap
GATA6 16 datasets
ChIP DE DE-GATA6-1 456 bp overlap
ChIP DE DE-GATA6-2 420 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 405 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 343 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 434 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 386 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 349 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 409 bp overlap
ChIP foregut GSE117136.GATA6.foregut 403 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 331 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 296 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 378 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 453 bp overlap
GLIS2 3 datasets
Motif DE_48h DE_48h-GLIS2_MA0736.1 14 bp overlap
Motif DE_60h DE_60h-GLIS2_MA0736.1 14 bp overlap
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
Gata3 3 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
IRF7 3 datasets
Motif DE_48h DE_48h-IRF7_MA0772.2 13 bp overlap
Motif DE_60h DE_60h-IRF7_MA0772.2 13 bp overlap
Motif DE_72h DE_72h-IRF7_MA0772.2 13 bp overlap
Irf1 3 datasets
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
KLF1 3 datasets
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF10 3 datasets
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
KLF12 4 datasets
Motif DE_48h DE_48h-KLF12_MA0742.2 9 bp overlap
Motif DE_48h DE_48h-KLF12_MA0742.2 9 bp overlap
Motif DE_60h DE_60h-KLF12_MA0742.2 9 bp overlap
Motif DE_72h DE_72h-KLF12_MA0742.2 9 bp overlap
KLF14 3 datasets
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF15 3 datasets
Motif DE_48h DE_48h-KLF15_MA1513.2 8 bp overlap
Motif DE_60h DE_60h-KLF15_MA1513.2 8 bp overlap
Motif DE_72h DE_72h-KLF15_MA1513.2 8 bp overlap
KLF2 3 datasets
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 3 datasets
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF5 3 datasets
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
KLF7 3 datasets
Motif DE_48h DE_48h-KLF7_MA1959.2 8 bp overlap
Motif DE_60h DE_60h-KLF7_MA1959.2 8 bp overlap
Motif DE_72h DE_72h-KLF7_MA1959.2 8 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 286 bp overlap
NR3C1 1 dataset
Motif DE_48h DE_48h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif DE_48h DE_48h-NR3C2_MA0727.2 15 bp overlap
PATZ1 4 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
PBX1 1 dataset
Motif DE_48h DE_48h-PBX1_MA0070.2 9 bp overlap
POU1F1 3 datasets
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
Motif DE_60h DE_60h-POU1F1_MA0784.3 14 bp overlap
Motif DE_72h DE_72h-POU1F1_MA0784.3 14 bp overlap
POU2F2 3 datasets
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
Motif DE_72h DE_72h-POU2F2_MA0507.3 13 bp overlap
POU3F2 3 datasets
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
Motif DE_72h DE_72h-POU3F2_MA0787.1 12 bp overlap
PRDM9 3 datasets
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Pgr 1 dataset
Motif DE_48h DE_48h-Pgr_MA2323.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 300 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 168 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 217 bp overlap
SOX10 3 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 233 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 398 bp overlap
SOX21 3 datasets
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Motif DE_72h DE_72h-SOX21_MA0866.1 15 bp overlap
SOX4 3 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SP2 4 datasets
Motif DE_48h DE_48h-SP2_MA0516.3 9 bp overlap
Motif DE_48h DE_48h-SP2_MA0516.3 9 bp overlap
Motif DE_60h DE_60h-SP2_MA0516.3 9 bp overlap
Motif DE_72h DE_72h-SP2_MA0516.3 9 bp overlap
SP4 3 datasets
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP9 1 dataset
Motif DE_48h DE_48h-SP9_MA1564.2 10 bp overlap
STAT1::STAT2 3 datasets
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_72h DE_72h-STAT1STAT2_MA0517.2 13 bp overlap
Sox1 4 datasets
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Motif DE_72h DE_72h-Sox1_MA0870.1 15 bp overlap
Spz1 3 datasets
Motif DE_48h DE_48h-Spz1_MA0111.1 11 bp overlap
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
Stat4 1 dataset
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
Stat6 1 dataset
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
TBX5 2 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 168 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 218 bp overlap
TRPS1 3 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
VEZF1 3 datasets
Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Motif DE_72h DE_72h-VEZF1_MA1578.2 6 bp overlap
ZBED4 3 datasets
Motif DE_48h DE_48h-ZBED4_MA2328.1 10 bp overlap
Motif DE_60h DE_60h-ZBED4_MA2328.1 10 bp overlap
Motif DE_72h DE_72h-ZBED4_MA2328.1 10 bp overlap
ZFP14 1 dataset
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
ZIC1 3 datasets
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC5 3 datasets
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
Motif DE_60h DE_60h-ZIC5_MA1584.2 15 bp overlap
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF143 1 dataset
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
ZNF148 1 dataset
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
ZNF24 3 datasets
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF257 1 dataset
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
ZNF281 5 datasets
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF282 1 dataset
Motif DE_48h DE_48h-ZNF282_MA1154.2 15 bp overlap
ZNF341 1 dataset
Motif DE_48h DE_48h-ZNF341_MA1655.2 8 bp overlap
ZNF530 3 datasets
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF708 1 dataset
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
ZNF740 3 datasets
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap
Motif DE_72h DE_72h-ZNF740_MA0753.3 10 bp overlap
ZNF768 1 dataset
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
ZNF816 1 dataset
Motif DE_48h DE_48h-ZNF816_MA1719.2 15 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap