chr4 : 53,375,113 – 53,375,690
577 bp 13 TFs 3 linked genes
This 577 bp open chromatin element is linked to FIP1L1, ENSG00000282278, and SCFD2 and is bound by 13 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FIP1L1 2.0 kb Proximal Proximity
ENSG00000282278 2.1 kb Proximal Proximity
SCFD2 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:53,370,113 – 53,380,690
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
13 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 144 bp overlap
ChIP K562 ENCFF343XWA 161 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 305 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 312 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 241 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 375 bp overlap
ChIP DE DE-FOXA2-1 523 bp overlap
ChIP DE DE-FOXA2-2 460 bp overlap
GATA4 7 datasets
ChIP A-549 GSE85002.GATA4.A-549 211 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 300 bp overlap
ChIP DE DE-GATA4-1 492 bp overlap
ChIP DE DE-GATA4-2 577 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 344 bp overlap
ChIP foregut GSE117136.GATA4.foregut 540 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 411 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 249 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 173 bp overlap
ChIP DE DE-GATA6-1 577 bp overlap
ChIP DE DE-GATA6-2 577 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 458 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 577 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 387 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 429 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 577 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 483 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 273 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 272 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 512 bp overlap
ChIP foregut GSE117136.GATA6.foregut 266 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 149 bp overlap
KDM1A 6 datasets
ChIP K562 ENCFF128TYE 252 bp overlap
ChIP K562 ENCFF934ZRG 133 bp overlap
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 60 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 82 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 67 bp overlap
ChIP SKNO-1_GSK690 GSE71739.KDM1A.SKNO-1_GSK690 82 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 120 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 265 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 486 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 415 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 211 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 73 bp overlap
ChIP K562 ENCFF361LXT 134 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 135 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 174 bp overlap