Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

43 transcription factors

Cebpa 1 dataset

ChIP BLaER1 ENCFF093OYK 104 bp overlap

Crx 3 datasets

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

Dmbx1 3 datasets

Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap

Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap

Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap

EWSR1-FLI1 3 datasets

Motif DE_48h DE_48h-EWSR1-FLI1_MA0149.1 18 bp overlap

Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap

Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap

FOXA2 1 dataset

ChIP DE DE-FOXA2-2 270 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 504 bp overlap

ChIP DE DE-GATA4-2 517 bp overlap

GATA6 6 datasets

ChIP DE DE-GATA6-1 412 bp overlap

ChIP DE DE-GATA6-2 527 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 408 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 371 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 433 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 482 bp overlap

GSC 3 datasets

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 3 datasets

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

HOXA10 3 datasets

Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap

Motif DE_60h DE_60h-HOXA10_MA0899.2 9 bp overlap

Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap

HOXD9 3 datasets

Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap

Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap

Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap

Hnf1A 3 datasets

Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap

Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap

Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

IRF3 2 datasets

Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap

Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap

IRF4 2 datasets

Motif DE_48h DE_48h-IRF4_MA1419.2 14 bp overlap

Motif DE_72h DE_72h-IRF4_MA1419.2 14 bp overlap

IRF6 2 datasets

Motif DE_48h DE_48h-IRF6_MA1509.1 9 bp overlap

Motif DE_72h DE_72h-IRF6_MA1509.1 9 bp overlap

IRF7 2 datasets

Motif DE_48h DE_48h-IRF7_MA0772.2 13 bp overlap

Motif DE_72h DE_72h-IRF7_MA0772.2 13 bp overlap

IRF8 2 datasets

Motif DE_48h DE_48h-IRF8_MA0652.2 13 bp overlap

Motif DE_72h DE_72h-IRF8_MA0652.2 13 bp overlap

IRF9 2 datasets

Motif DE_48h DE_48h-IRF9_MA0653.1 15 bp overlap

Motif DE_72h DE_72h-IRF9_MA0653.1 15 bp overlap

Irf1 2 datasets

Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap

Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap

JUN 2 datasets

ChIP DE_D2 S02-DE-d2-JUN-exp1 260 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap

KLF1 3 datasets

Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap

Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap

Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap

KLF2 3 datasets

Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap

Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap

Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap

KLF4 3 datasets

Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap

Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap

Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap

KLF5 3 datasets

Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap

Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap

Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap

OSR2 1 dataset

Motif DE_60h DE_60h-OSR2_MA1646.2 8 bp overlap

OTX1 3 datasets

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

PITX1 3 datasets

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX3 3 datasets

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 340 bp overlap

PRDM9 3 datasets

Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap

Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap

Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap

RHOXF1 3 datasets

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 334 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 352 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 502 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 434 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 309 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 198 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 388 bp overlap

Wt1 3 datasets

Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap

Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap

Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap

ZBTB24 1 dataset

Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap

ZBTB32 2 datasets

Motif DE_48h DE_48h-ZBTB32_MA1580.1 10 bp overlap

Motif DE_72h DE_72h-ZBTB32_MA1580.1 10 bp overlap

ZKSCAN5 3 datasets

Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap

Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap

Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF140 3 datasets

Motif DE_48h DE_48h-ZNF140_MA1589.2 19 bp overlap

Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap

Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap

ZNF410 3 datasets

Motif DE_48h DE_48h-ZNF410_MA0752.2 16 bp overlap

Motif DE_60h DE_60h-ZNF410_MA0752.2 16 bp overlap

Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap

ZNF707 3 datasets

Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap

Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap

Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap

Gene	Expression	Dist. to TSS	Distance	Link type
MAPK10		117.9 kb	Distal	Multiome
PTPN13		118.2 kb	Distal	Multiome

Genome Browser