chr4 : 87,921,767 – 87,922,408
641 bp 58 TFs 3 linked genes
This 641 bp open chromatin element is linked to SPP1, PKD2, and ABCG2 and is bound by 58 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SPP1 53.7 kb Distal Multiome
PKD2 85.6 kb Distal Multiome
ABCG2 237.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:87,916,767 – 87,927,408
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 332 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
Atoh1 2 datasets
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
Motif DE_24h DE_24h-Atoh1_MA1467.3 7 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 195 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 243 bp overlap
ELK1::HOXA1 2 datasets
Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap
Motif DE_24h DE_24h-ELK1HOXA1_MA1931.1 14 bp overlap
ELK1::HOXB13 2 datasets
Motif DE_12h DE_12h-ELK1HOXB13_MA1932.2 15 bp overlap
Motif DE_24h DE_24h-ELK1HOXB13_MA1932.2 15 bp overlap
ETS1 2 datasets
ChIP GM23338 ENCFF701IZH 377 bp overlap
ChIP GM23338 ENCFF701IZH 304 bp overlap
ETV5::HOXA2 2 datasets
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_24h DE_24h-ETV5HOXA2_MA1948.2 12 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 359 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 176 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 237 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 335 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 65 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 145 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 245 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif DE_24h DE_24h-HIC2_MA0738.2 6 bp overlap
HMBOX1 2 datasets
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_24h DE_24h-HMBOX1_MA0895.2 7 bp overlap
HOXB2::ELK1 2 datasets
Motif DE_12h DE_12h-HOXB2ELK1_MA1957.1 14 bp overlap
Motif DE_24h DE_24h-HOXB2ELK1_MA1957.1 14 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 321 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 367 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 333 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 328 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 349 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 262 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 257 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 58 bp overlap
KLF6 2 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif DE_24h DE_24h-KLF6_MA1517.2 9 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 396 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 168 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 94 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 251 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 181 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 201 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 196 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 192 bp overlap
NEUROD1 3 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 137 bp overlap
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_24h DE_24h-NEUROG2_MA1642.2 7 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_24h DE_24h-Nr1h3Rxra_MA0494.2 16 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 360 bp overlap
ChIP GM23338 ENCFF450WCS 276 bp overlap
ChIP H1 ENCFF566JSR 259 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 321 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 247 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 122 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 147 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 333 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 84 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 120 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 262 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 351 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 321 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 351 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 272 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 302 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 137 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 285 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 153 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 488 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SPIB 1 dataset
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP H1 ENCFF478SZO 348 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 53 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 67 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 65 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 210 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 298 bp overlap
THAP1 1 dataset
Motif DE_24h DE_24h-THAP1_MA0597.3 8 bp overlap
TP53 2 datasets
ChIP H9 GSE142050.TP53.H9 91 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 78 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 166 bp overlap
TWIST1 2 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif DE_24h DE_24h-TWIST1_MA1123.3 8 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 125 bp overlap
ZBTB7B 1 dataset
Motif ES_0h ES_0h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 1 dataset
Motif ES_0h ES_0h-ZBTB7C_MA0695.2 8 bp overlap
ZNF232 2 datasets
ChIP WTC11 ENCFF901BGD 201 bp overlap
ChIP WTC11 ENCFF901BGD 404 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 157 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 152 bp overlap