chr4 : 88,112,943 – 88,113,755
812 bp 47 TFs 3 linked genes
This 812 bp open chromatin element is linked to PKD2, PPM1K, and HERC6 and is bound by 47 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PKD2 105.8 kb Distal Multiome
PPM1K 171.2 kb Distal Multiome
HERC6 265.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:88,107,943 – 88,118,755
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 228 bp overlap
Atoh1 1 dataset
Motif DE_48h DE_48h-Atoh1_MA1467.3 7 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 231 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CREB1 1 dataset
Motif DE_48h DE_48h-CREB1_MA0018.5 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 417 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 530 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 194 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 812 bp overlap
ChIP DE DE-FOXA2-2 812 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 301 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 140 bp overlap
GATA2 2 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 162 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 799 bp overlap
ChIP DE DE-GATA4-2 812 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 442 bp overlap
ChIP foregut GSE117136.GATA4.foregut 391 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 406 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 407 bp overlap
GATA6 15 datasets
ChIP AGS GSE51705.GATA6.AGS 292 bp overlap
ChIP AGS GSE51705.GATA6.AGS 254 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 168 bp overlap
ChIP DE DE-GATA6-1 812 bp overlap
ChIP DE DE-GATA6-2 812 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 338 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 775 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 581 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 398 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 196 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 225 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 533 bp overlap
ChIP foregut GSE117136.GATA6.foregut 463 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 395 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 381 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
ISL2 1 dataset
ChIP Hep-G2 ENCSR492IHH.ISL2.Hep-G2 241 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 353 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 271 bp overlap
LIN54 1 dataset
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_48h DE_48h-MEIS3_MA0775.2 7 bp overlap
MZF1 1 dataset
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Mafg 1 dataset
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
NFKB1 1 dataset
Motif DE_60h DE_60h-NFKB1_MA0105.4 13 bp overlap
NFKB2 1 dataset
Motif DE_60h DE_60h-NFKB2_MA0778.2 11 bp overlap
OSR2 1 dataset
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 193 bp overlap
REL 1 dataset
Motif DE_60h DE_60h-REL_MA0101.1 10 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 501 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 568 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 812 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 187 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 307 bp overlap
TAL1 2 datasets
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 180 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 173 bp overlap
ZNF121 2 datasets
ChIP Hep-G2 ENCSR945QEW.ZNF121.Hep-G2 268 bp overlap
ChIP HepG2 ENCFF343YSL 368 bp overlap
ZNF24 1 dataset
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
ZNF770 2 datasets
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 206 bp overlap
ChIP HepG2 ENCFF233UVH 362 bp overlap
Zfx 1 dataset
Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap