chr4 : 98,251,092 – 98,251,438
346 bp 12 TFs 2 linked genes
This 346 bp open chromatin element is linked to ENSG00000289532 and RAP1GDS1 and is bound by 12 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000289532 9.8 kb Proximal Proximity
RAP1GDS1 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:98,246,092 – 98,256,438
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 80 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 126 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 280 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 346 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 311 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 346 bp overlap
ChIP DE DE-GATA4-2 346 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 323 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 346 bp overlap
ChIP DE DE-GATA6-2 346 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 346 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 346 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 346 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 346 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 346 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 346 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 346 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 287 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 225 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 237 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 317 bp overlap