chr1 : 78,214,003 – 78,214,778
775 bp 12 TFs 3 linked genes
This 775 bp open chromatin element is linked to DNAJB4, FUBP1, and NEXN and is bound by 12 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DNAJB4 235.2 kb Distal Multiome
FUBP1 235.4 kb Distal Multiome
NEXN 326.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:78,209,003 – 78,219,778
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
12 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 221 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 489 bp overlap
ChIP DE DE-FOXA2-2 466 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 363 bp overlap
ChIP DE DE-GATA4-2 556 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 350 bp overlap
ChIP DE DE-GATA6-2 453 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 175 bp overlap
KLF4 1 dataset
ChIP WIBR3 GSE130417.KLF4.WIBR3 127 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 254 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 174 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 194 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 775 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 739 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 130 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 626 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 696 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 216 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 274 bp overlap