chr4 : 139,550,863 – 139,551,333
470 bp 87 TFs 2 linked genes
This 470 bp open chromatin element is linked to SETD7 and ENSG00000272717 and is bound by 87 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SETD7 4.9 kb Proximal Proximity
ENSG00000272717 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,545,863 – 139,556,333
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 157 bp overlap
ATF2 2 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif DE_36h DE_36h-ATF2_MA1632.2 10 bp overlap
ATF6 2 datasets
Motif DE_12h DE_12h-ATF6_MA1466.2 13 bp overlap
Motif DE_36h DE_36h-ATF6_MA1466.2 13 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 59 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 244 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 144 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 146 bp overlap
CREB1 2 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif DE_36h DE_36h-CREB1_MA0018.5 8 bp overlap
CTCF 2 datasets
ChIP dorsolateral prefrontal cortex ENCFF433UFM 287 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 224 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 260 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 341 bp overlap
FOXM1 2 datasets
ChIP HEK293 GSE60032.FOXM1.HEK293 213 bp overlap
ChIP K562 ENCFF255RHV 339 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 128 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 260 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 182 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 232 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 419 bp overlap
ChIP DE DE-GATA4-2 419 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 368 bp overlap
ChIP foregut GSE117136.GATA4.foregut 402 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 462 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 244 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP DE DE-GATA6-1 345 bp overlap
ChIP DE DE-GATA6-2 444 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 470 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 470 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 357 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 470 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 451 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 180 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 363 bp overlap
ChIP foregut GSE117136.GATA6.foregut 409 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 395 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 265 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 382 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 222 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 222 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 280 bp overlap
Gata3 1 dataset
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 189 bp overlap
HMBOX1 5 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 313 bp overlap
ChIP K562 ENCFF055GAZ 470 bp overlap
ChIP K562 ENCFF055GAZ 262 bp overlap
ChIP K562 ENCFF317JJX 470 bp overlap
ChIP K562 ENCFF317JJX 295 bp overlap
HNF4A 1 dataset
Motif DE_36h DE_36h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_36h DE_36h-HNF4G_MA0484.3 9 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 370 bp overlap
ChIP K562 ENCFF348IBL 304 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 309 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 291 bp overlap
JUN 6 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 322 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 359 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 402 bp overlap
ChIP myometrium_PT916 GSE128230.JUN.myometrium_PT916 61 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 214 bp overlap
KMT2A 6 datasets
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 81 bp overlap
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 234 bp overlap
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 286 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 273 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 359 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 276 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 252 bp overlap
MAFK 3 datasets
ChIP A549 ENCFF371EPR 288 bp overlap
ChIP H1 ENCFF854XWE 265 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 137 bp overlap
MAX 1 dataset
ChIP liver ENCSR847DIT.MAX.liver 173 bp overlap
MED12 2 datasets
ChIP myometrium_PT848 GSE128230.MED12.myometrium_PT848 54 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 116 bp overlap
MTF1 1 dataset
Motif DE_36h DE_36h-MTF1_MA0863.1 14 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 147 bp overlap
NEUROD1 4 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 323 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 167 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 363 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 386 bp overlap
NFATC3 1 dataset
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
NR2F2 4 datasets
ChIP liver ENCFF427MRU 365 bp overlap
ChIP liver ENCFF565JGD 366 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 257 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 158 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 219 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 79 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 86 bp overlap
PGR 2 datasets
Motif DE_36h DE_36h-PGR_MA2327.1 9 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 200 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 181 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 173 bp overlap
PKNOX1 1 dataset
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 112 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF754JQR 304 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 258 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 99 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 108 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 329 bp overlap
Prdm15 1 dataset
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Rfx6 1 dataset
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 251 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 311 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 375 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 266 bp overlap
SMARCA4 1 dataset
ChIP hiPSC GSE124903.SMARCA4.hiPSC 257 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 191 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 332 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 195 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 213 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 255 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 110 bp overlap
TCF12 1 dataset
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 208 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 470 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 365 bp overlap
TRPS1 1 dataset
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 327 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 412 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 396 bp overlap
ChIP HEK293 ENCFF865LIO 171 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 107 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 354 bp overlap
ZNF18 4 datasets
ChIP HEK293 ENCFF066NGR 178 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 306 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 210 bp overlap
ChIP HEK293T GSE78099.ZNF18.HEK293T 279 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 160 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 323 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 407 bp overlap
ZNF318 1 dataset
ChIP K-562 ENCSR334HSW.ZNF318.K-562 235 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF337 1 dataset
ChIP HEK293T GSE78099.ZNF337.HEK293T 192 bp overlap
ZNF341 3 datasets
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
Motif DE_24h DE_24h-ZNF341_MA1655.2 8 bp overlap
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 470 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 224 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 137 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 171 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 258 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 121 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 149 bp overlap
Zfx 1 dataset
Motif DE_36h DE_36h-Zfx_MA0146.3 10 bp overlap
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