chr4 : 139,554,508 – 139,554,649
141 bp 24 TFs 2 linked genes
This 141 bp open chromatin element is linked to SETD7 and ENSG00000272717 and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SETD7 1.6 kb Proximal Proximity
ENSG00000272717 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:139,549,508 – 139,559,649
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 141 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 107 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 141 bp overlap
FOXA1 6 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 80 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 53 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 85 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 141 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 136 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 134 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 141 bp overlap
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 141 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 141 bp overlap
ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 141 bp overlap
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 141 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 141 bp overlap
ChIP DE DE-FOXA2-1 141 bp overlap
ChIP DE DE-FOXA2-2 141 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 92 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 117 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 141 bp overlap
ChIP DE DE-GATA4-2 141 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 141 bp overlap
ChIP DE DE-GATA6-2 141 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 141 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 141 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 141 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 141 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 141 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 141 bp overlap
HOXB13 2 datasets
ChIP G-401 GSE65381.HOXB13.G-401 96 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 141 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 141 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 141 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 141 bp overlap
KMT2A 3 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 141 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 82 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 60 bp overlap
MEN1 2 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 141 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 141 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 141 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 126 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 132 bp overlap
ChIP hESC GSE18292.NANOG.hESC 55 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 141 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 141 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 141 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 141 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 141 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 141 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 107 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 97 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 141 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 141 bp overlap
YY1 1 dataset
ChIP liver ENCFF400MBC 141 bp overlap