chr4 : 169,347,007 – 169,347,496
489 bp 18 TFs 3 linked genes
This 489 bp open chromatin element is linked to SH3RF1, NEK1, and CLCN3 and is bound by 18 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SH3RF1 76.3 kb Distal Multiome
NEK1 265.4 kb Distal Multiome
CLCN3 273.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:169,342,007 – 169,352,496
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 291 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 347 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 166 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 349 bp overlap
ChIP DE DE-FOXA2-2 368 bp overlap
GATA2 3 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 152 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 335 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 211 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 458 bp overlap
ChIP DE DE-GATA4-2 489 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 452 bp overlap
ChIP foregut GSE117136.GATA4.foregut 266 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 489 bp overlap
ChIP DE DE-GATA6-2 489 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 334 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 282 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 338 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 388 bp overlap
ChIP foregut GSE117136.GATA6.foregut 429 bp overlap
HOXB13 4 datasets
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 75 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 103 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 102 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 51 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 325 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 278 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 53 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 467 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 350 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 489 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 489 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 489 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 489 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 489 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 489 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 166 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 489 bp overlap