chr4 : 186,734,251 – 186,735,164
913 bp 90 TFs 2 linked genes
This 913 bp open chromatin element is linked to FAT1 and MTNR1A and is bound by 90 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FAT1 7.5 kb Proximal Proximity
MTNR1A 179.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:186,729,251 – 186,740,164
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 210 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 233 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 254 bp overlap
ASCL1 3 datasets
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
Ahr::Arnt 2 datasets
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
BCL3 2 datasets
ChIP GM12878 ENCFF854PAY 290 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 196 bp overlap
BRD4 3 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 278 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 262 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 286 bp overlap
CRX 2 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 261 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 276 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 157 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 246 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 426 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 383 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 272 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 147 bp overlap
FIGLA 3 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 584 bp overlap
ChIP DE DE-FOXA2-2 614 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 324 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 283 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 679 bp overlap
ChIP DE DE-GATA4-2 791 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 688 bp overlap
ChIP DE DE-GATA6-2 784 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 526 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 687 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 589 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 586 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 669 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 612 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 684 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
IRF3 2 datasets
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
MED1 3 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 583 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 509 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 387 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 278 bp overlap
MYOD1 3 datasets
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
MZF1 1 dataset
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 310 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 390 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 170 bp overlap
NR2C2 4 datasets
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Motif DE_72h DE_72h-NR2C2_MA0504.2 14 bp overlap
ONECUT1 2 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 106 bp overlap
ChIP HepG2 ENCFF243FIR 138 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 357 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 326 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 314 bp overlap
PHIP 4 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 262 bp overlap
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 305 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 466 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 200 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 248 bp overlap
PRDM1 4 datasets
Motif DE_48h DE_48h-PRDM1_MA0508.4 7 bp overlap
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
ChIP HEK293 ENCFF302TBP 421 bp overlap
ChIP HEK293 ENCFF302TBP 332 bp overlap
PRDM9 1 dataset
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
PROP1 1 dataset
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Rarg 4 datasets
Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap
Motif DE_72h DE_72h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 633 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 392 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 464 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 246 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 661 bp overlap
SMARCC1 1 dataset
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 185 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 423 bp overlap
SPIC 2 datasets
Motif DE_48h DE_48h-SPIC_MA0687.2 13 bp overlap
Motif DE_60h DE_60h-SPIC_MA0687.2 13 bp overlap
STAT5A 2 datasets
ChIP GM12878 ENCSR000BQZ.STAT5A.GM12878 133 bp overlap
ChIP MV4-11 GSE64862.STAT5A.MV4-11 87 bp overlap
Stat2 2 datasets
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 206 bp overlap
TBX1 2 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 6 datasets
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX19 2 datasets
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
Motif DE_60h DE_60h-TBX19_MA0804.2 17 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX4 2 datasets
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBXT 2 datasets
Motif DE_48h DE_48h-TBXT_MA0009.2 16 bp overlap
Motif DE_60h DE_60h-TBXT_MA0009.2 16 bp overlap
TCF4 3 datasets
Motif DE_48h DE_48h-TCF4_MA0830.3 8 bp overlap
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TEAD1 4 datasets
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD3 4 datasets
Motif DE_36h DE_36h-TEAD3_MA0808.1 8 bp overlap
Motif DE_48h DE_48h-TEAD3_MA0808.1 8 bp overlap
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap
TEAD4 4 datasets
Motif DE_36h DE_36h-TEAD4_MA0809.3 8 bp overlap
Motif DE_48h DE_48h-TEAD4_MA0809.3 8 bp overlap
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_60h DE_60h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif DE_60h DE_60h-TFAP2E_MA1569.2 9 bp overlap
THRB 4 datasets
Motif DE_36h DE_36h-THRB_MA1574.2 13 bp overlap
Motif DE_48h DE_48h-THRB_MA1574.2 13 bp overlap
Motif DE_60h DE_60h-THRB_MA1574.2 13 bp overlap
Motif DE_72h DE_72h-THRB_MA1574.2 13 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 106 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 106 bp overlap
USF1 2 datasets
ChIP K-562 ENCSR000BKT.USF1.K-562 133 bp overlap
ChIP K562 ENCFF633EZB 253 bp overlap
USF2 2 datasets
ChIP K-562 ENCSR578KEN.USF2.K-562 111 bp overlap
ChIP K562 ENCFF397QGU 240 bp overlap
Wt1 2 datasets
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BKU.YY1.K-562 118 bp overlap
ZBTB24 3 datasets
Motif DE_48h DE_48h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 272 bp overlap
ZEB1 3 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZFP14 2 datasets
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
Motif DE_60h DE_60h-ZFP14_MA1972.1 15 bp overlap
ZIM3 4 datasets
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 135 bp overlap
ZNF274 2 datasets
Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
ZNF530 8 datasets
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_48h DE_48h-ZNF530_MA1981.2 14 bp overlap
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
Motif DE_60h DE_60h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
Motif DE_72h DE_72h-ZNF530_MA1981.2 14 bp overlap
ZNF692 2 datasets
Motif DE_48h DE_48h-ZNF692_MA1986.2 8 bp overlap
Motif DE_60h DE_60h-ZNF692_MA1986.2 8 bp overlap
ZNF707 1 dataset
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap