chr5 : 6,637,424 – 6,638,209
785 bp 16 TFs 2 linked genes
This 785 bp open chromatin element is linked to SRD5A1 and NSUN2 and is bound by 16 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SRD5A1 4.0 kb Proximal Proximity
NSUN2 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:6,632,424 – 6,643,209
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 227 bp overlap
BRD4 1 dataset
ChIP COLO-205 GSE73319.BRD4.COLO-205 473 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 139 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 285 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 435 bp overlap
ChIP DE DE-FOXA2-2 669 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 621 bp overlap
ChIP DE DE-GATA4-2 690 bp overlap
ChIP foregut GSE117136.GATA4.foregut 438 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 597 bp overlap
ChIP DE DE-GATA6-2 773 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 522 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 490 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 704 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 572 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 702 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 644 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 409 bp overlap
ChIP foregut GSE117136.GATA6.foregut 300 bp overlap
HNF4A 3 datasets
ChIP liver ENCFF354NRH 206 bp overlap
ChIP liver ENCFF449HPV 254 bp overlap
ChIP liver ERP002306.HNF4A.liver 207 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 184 bp overlap
ChIP liver ENCFF807CIA 451 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 283 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 290 bp overlap
SP1 2 datasets
ChIP liver ENCFF597LFJ 485 bp overlap
ChIP liver ENCFF769YSM 511 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 150 bp overlap
TAF1 1 dataset
ChIP liver ENCFF610UQP 459 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 133 bp overlap
ZSCAN22 1 dataset
ChIP HepG2 ENCFF246MVE 631 bp overlap