chr5 : 16,617,603 – 16,618,016
413 bp 85 TFs 2 linked genes
This 413 bp open chromatin element is linked to ENSG00000250415 and RETREG1 and is bound by 85 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000250415 379 bp At TSS Proximity
RETREG1 635 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:16,612,603 – 16,623,016
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 262 bp overlap
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 292 bp overlap
ARID5B 1 dataset
ChIP Jurkat GSE97512.ARID5B.Jurkat 262 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 141 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 57 bp overlap
BCL11B 3 datasets
ChIP PBMC_T-reg GSE120872.BCL11B.PBMC_T-reg 195 bp overlap
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 408 bp overlap
ChIP thymus_CD34pos GSE84677.BCL11B.thymus_CD34pos 279 bp overlap
BCL6 2 datasets
ChIP CD4 GSE59933.BCL6.CD4 209 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 268 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 413 bp overlap
BRD4 15 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 262 bp overlap
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 335 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 108 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 412 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 413 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 355 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 226 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 413 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 413 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 413 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 413 bp overlap
ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 336 bp overlap
ChIP T-cell_iBET-BD2 GSE138084.BRD4.T-cell_iBET-BD2 347 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 413 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 160 bp overlap
CDK7 3 datasets
ChIP Jurkat GSE50622.CDK7.Jurkat 331 bp overlap
ChIP Jurkat GSE83777.CDK7.Jurkat 220 bp overlap
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 220 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 66 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 97 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 150 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 72 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 361 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 305 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 221 bp overlap
EP300 1 dataset
ChIP AML GSE131939.EP300.AML 101 bp overlap
ERG 2 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 174 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 144 bp overlap
ETS1 3 datasets
ChIP CD4-pos GSE146787.ETS1.CD4-pos 366 bp overlap
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 241 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 270 bp overlap
EZH2 7 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 54 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 381 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 65 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 347 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 137 bp overlap
ChIP T98G GSE112240.EZH2.T98G 330 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 413 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 371 bp overlap
FLI1 3 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 166 bp overlap
ChIP SEM GSE117864.FLI1.SEM 191 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 413 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 76 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 407 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 52 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 144 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 189 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 331 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 244 bp overlap
JUNB 1 dataset
ChIP CD4 GSE116695.JUNB.CD4 203 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 136 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 413 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 336 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 175 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.LMO2.Kasumi-1_SIRUNX1ETO 155 bp overlap
MAF 2 datasets
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 409 bp overlap
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 263 bp overlap
MAX 4 datasets
ChIP H1 ENCFF914VQY 104 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 307 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 340 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 325 bp overlap
MED1 1 dataset
ChIP Jurkat GSE59657.MED1.Jurkat 386 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 73 bp overlap
MYB 4 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 321 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 372 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 255 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 413 bp overlap
MYC 2 datasets
ChIP Jurkat GSE83777.MYC.Jurkat 413 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 276 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 193 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 135 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 280 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 352 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 334 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 413 bp overlap
NR3C1 2 datasets
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 283 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 138 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE126300.PAX5.NALM-6 191 bp overlap
ChIP NALM-6 GSE115764.PAX5.NALM-6 315 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 413 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 199 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 196 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 300 bp overlap
ChIP HEK293 ENCFF145WQQ 141 bp overlap
PRPF4 1 dataset
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 169 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 170 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 170 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 324 bp overlap
RELA 3 datasets
ChIP 786-O GSE86092.RELA.786-O 67 bp overlap
ChIP BJAB GSE117250.RELA.BJAB 154 bp overlap
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 168 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 413 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 221 bp overlap
RUNX1 6 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 81 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 406 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 81 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 347 bp overlap
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 174 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 182 bp overlap
RUNX2 1 dataset
ChIP PER-117 GSE151819.RUNX2.PER-117 396 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 116 bp overlap
SKI 1 dataset
ChIP HL-60 GSE107553.SKI.HL-60 191 bp overlap
SMARCA4 2 datasets
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 413 bp overlap
ChIP J-Lat_GFP-Clone-A72_JQ1 GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_JQ1 413 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 187 bp overlap
SPI1 4 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 259 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 225 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 183 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 108 bp overlap
STAT5B 1 dataset
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 188 bp overlap
SUPT5H 2 datasets
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 103 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 84 bp overlap
SUZ12 1 dataset
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 251 bp overlap
TAL1 2 datasets
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 390 bp overlap
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 191 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 152 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 166 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 251 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 283 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 205 bp overlap
YY1 1 dataset
ChIP ALL GSE145549.YY1.ALL 138 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 228 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 285 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 295 bp overlap
ZNF121 1 dataset
ChIP HEK293 ENCSR224QDY.ZNF121.HEK293 366 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 315 bp overlap
ZNF202 1 dataset
ChIP HEK293 ENCFF574FZA 341 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 246 bp overlap
ChIP HEK293 ENCFF799ATK 365 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 330 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 332 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 404 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 322 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 183 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 167 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 122 bp overlap
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