chr1 : 89,530,736 – 89,531,008
272 bp 66 TFs 2 linked genes
This 272 bp open chromatin element is linked to ENSG00000286548 and LRRC8B and is bound by 66 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000286548 5.3 kb Proximal Proximity
LRRC8B 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:89,525,736 – 89,536,008
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 158 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 261 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 180 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 265 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 272 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 168 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 139 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 243 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 272 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 162 bp overlap
BRF2 1 dataset
ChIP IMR-90_TERT GSE38303.BRF2.IMR-90_TERT 155 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 186 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 150 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 266 bp overlap
CTCF 1 dataset
ChIP GM23338 ENCFF772DML 197 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 149 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 138 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 186 bp overlap
ETV6 1 dataset
ChIP Reh_pCCL-ETV6-HA GSE102785.ETV6.Reh_pCCL-ETV6-HA 189 bp overlap
EZH1 2 datasets
ChIP ProEs GSE59087.EZH1.ProEs 245 bp overlap
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 200 bp overlap
EZH2 2 datasets
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 92 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 260 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 272 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 153 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 149 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 272 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 150 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 260 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 191 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 272 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 151 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 151 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 272 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 272 bp overlap
ChIP WA01 ENCSR000ECA.JUN.WA01 140 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 218 bp overlap
MXI1 1 dataset
ChIP WA01 ENCSR000EBR.MXI1.WA01 139 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
NANOG 9 datasets
ChIP H1 ENCFF747ZPQ 223 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 272 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 259 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 211 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 272 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 272 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 269 bp overlap
ChIP hESC GSE20650.NANOG.hESC 157 bp overlap
ChIP hESC GSE18292.NANOG.hESC 116 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 222 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 124 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 229 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF262YXJ 268 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 250 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 189 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 272 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 181 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 192 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 243 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 147 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 165 bp overlap
RUNX1 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 143 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF896IJG 272 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 200 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 220 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 272 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_WT GSE138496.SMAD2-3.HGrC1_WT 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 272 bp overlap
SMAD3 4 datasets
ChIP BG03 GSE21614.SMAD3.BG03 188 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 208 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 230 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 263 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 272 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 195 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 272 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 259 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 258 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 272 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 159 bp overlap
SP1 2 datasets
ChIP WTC11 ENCFF688PEU 64 bp overlap
ChIP WTC11 ENCFF688PEU 272 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 242 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 110 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 148 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 228 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 104 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 134 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 272 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 164 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 185 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 161 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 237 bp overlap
ChIP WTC11 ENCFF352POG 272 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 272 bp overlap
ZNF263 4 datasets
ChIP HEK293 ENCFF336CWQ 272 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 196 bp overlap
ChIP K562 ENCFF640RNA 272 bp overlap
ChIP WTC11 ENCFF893RTM 272 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 272 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 144 bp overlap
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