chr5 : 55,178,218 – 55,178,427
209 bp 11 TFs 2 linked genes
This 209 bp open chromatin element is linked to CDC20B and MIR449C and is bound by 11 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CDC20B 5.0 kb Proximal Proximity
MIR449C 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:55,173,218 – 55,183,427
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
11 transcription factors
Source
Cell type
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 192 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 50 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 196 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 209 bp overlap
ChIP DE DE-GATA4-2 209 bp overlap
ChIP foregut GSE117136.GATA4.foregut 209 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 120 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 209 bp overlap
ChIP DE DE-GATA6-2 209 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 82 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 204 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 201 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 113 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 209 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 209 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 209 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 209 bp overlap
ChIP K562 ENCFF875HLX 98 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 55 bp overlap