chr1 : 90,826,876 – 90,827,347
471 bp 100 TFs 2 linked genes
This 471 bp open chromatin element is linked to LINC02609 and LINC02788 and is bound by 100 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02609 8.2 kb Proximal Proximity
LINC02788 8.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:90,821,876 – 90,832,347
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 290 bp overlap
ChIP K562 ENCFF938UXQ 226 bp overlap
ATF1 1 dataset
ChIP K562 ENCFF980NSF 203 bp overlap
Ascl2 3 datasets
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
BCL11A 4 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 110 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 83 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 83 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 66 bp overlap
BHLHE22 3 datasets
Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
BRD2 2 datasets
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 211 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD2.K-562_iBET-BD2-IFNG 227 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
Bhlha15 3 datasets
Motif DE_48h DE_48h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_60h DE_60h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_72h DE_72h-Bhlha15_MA1472.3 8 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 460 bp overlap
ChIP K562 ENCFF963TXY 128 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 358 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 261 bp overlap
ChIP K562 ENCFF673OEZ 272 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 179 bp overlap
CTBP1 3 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 400 bp overlap
ChIP K562 ENCFF403WPG 451 bp overlap
ChIP K562 ENCFF403WPG 365 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 263 bp overlap
DPF2 3 datasets
ChIP K-562 ENCSR219BXP.DPF2.K-562 337 bp overlap
ChIP K562 ENCFF775HUO 389 bp overlap
ChIP K562 ENCFF775HUO 457 bp overlap
E2F8 1 dataset
ChIP K-562 ENCSR953DVM.E2F8.K-562 225 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 150 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 408 bp overlap
EP300 3 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 175 bp overlap
ChIP K562 ENCFF226VMS 304 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 151 bp overlap
ESRRA 5 datasets
Motif DE_48h DE_48h-ESRRA_MA0592.4 9 bp overlap
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
Motif DE_72h DE_72h-ESRRA_MA0592.4 9 bp overlap
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 350 bp overlap
ChIP K562 ENCFF968PEP 229 bp overlap
ESRRB 3 datasets
Motif DE_48h DE_48h-ESRRB_MA0141.4 10 bp overlap
Motif DE_60h DE_60h-ESRRB_MA0141.4 10 bp overlap
Motif DE_72h DE_72h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 300 bp overlap
Esrrg 3 datasets
Motif DE_48h DE_48h-Esrrg_MA0643.2 9 bp overlap
Motif DE_60h DE_60h-Esrrg_MA0643.2 9 bp overlap
Motif DE_72h DE_72h-Esrrg_MA0643.2 9 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 268 bp overlap
GATA1 6 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 103 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 178 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 131 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 242 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 224 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 191 bp overlap
GATA2 11 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 265 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 114 bp overlap
ChIP SH-SY5Y ENCFF485YIB 286 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 241 bp overlap
ChIP SK-N-SH ENCFF764OZD 363 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 161 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 226 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 257 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 236 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 299 bp overlap
GATA4 9 datasets
ChIP DE DE-GATA4-1 397 bp overlap
ChIP DE DE-GATA4-2 471 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 251 bp overlap
ChIP foregut GSE117136.GATA4.foregut 348 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 267 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 370 bp overlap
GATA5 3 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 17 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 464 bp overlap
ChIP DE DE-GATA6-2 471 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 245 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 258 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 320 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 411 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 471 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 298 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 385 bp overlap
ChIP foregut GSE117136.GATA6.foregut 342 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 299 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 235 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 280 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 80 bp overlap
Gata3 3 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP Kelly GSE94822.HAND2.Kelly 306 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 238 bp overlap
ChIP K562 ENCFF968WBH 311 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 471 bp overlap
HDGF 3 datasets
ChIP K-562 ENCSR197ALX.HDGF.K-562 258 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 118 bp overlap
ChIP K-562 ENCSR563YDA.HDGF.K-562 81 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 236 bp overlap
HOXB8 1 dataset
ChIP K-562 GSE121208.HOXB8.K-562 248 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 279 bp overlap
JUND 1 dataset
ChIP K-562 ENCSR000EGN.JUND.K-562 189 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 230 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 209 bp overlap
KLF16 1 dataset
ChIP K562 ENCFF464PIV 311 bp overlap
LDB1 2 datasets
ChIP K-562 GSE142227.LDB1.K-562 234 bp overlap
ChIP K-562 GSE142227.LDB1.K-562 151 bp overlap
MAFF 3 datasets
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
Motif DE_72h DE_72h-MAFF_MA0495.4 11 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 193 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 298 bp overlap
MAFK 1 dataset
ChIP K562 ENCFF380WHM 281 bp overlap
MAZ 2 datasets
ChIP K-562 ENCSR000EFX.MAZ.K-562 107 bp overlap
ChIP K562 ENCFF333ZIV 325 bp overlap
MSC 3 datasets
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR113LAS.MTA2.K-562 194 bp overlap
MYF5 3 datasets
Motif DE_48h DE_48h-MYF5_MA1641.2 8 bp overlap
Motif DE_60h DE_60h-MYF5_MA1641.2 8 bp overlap
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 141 bp overlap
Mafb 2 datasets
Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap
Motif DE_72h DE_72h-Mafb_MA0117.3 11 bp overlap
Mecom 3 datasets
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 219 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 230 bp overlap
ChIP K562 ENCFF788MPU 312 bp overlap
ChIP K562 ENCFF866HRM 284 bp overlap
NEUROD1 3 datasets
Motif DE_48h DE_48h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_72h DE_72h-NEUROD1_MA1109.2 8 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 187 bp overlap
NKX2-2 2 datasets
Motif DE_48h DE_48h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_48h DE_48h-NKX2-5_MA0063.3 7 bp overlap
Motif DE_72h DE_72h-NKX2-5_MA0063.3 7 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 211 bp overlap
NR2F6 1 dataset
ChIP K562 ENCFF674RQA 320 bp overlap
NR5A1 2 datasets
Motif DE_48h DE_48h-NR5A1_MA1540.3 12 bp overlap
Motif DE_72h DE_72h-NR5A1_MA1540.3 12 bp overlap
NRL 2 datasets
Motif DE_48h DE_48h-NRL_MA0842.3 12 bp overlap
Motif DE_72h DE_72h-NRL_MA0842.3 12 bp overlap
Neurod2 6 datasets
Motif DE_48h DE_48h-Neurod2_MA0668.3 8 bp overlap
Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap
Motif DE_72h DE_72h-Neurod2_MA0668.3 8 bp overlap
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
Nr5A2 3 datasets
Motif DE_48h DE_48h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_60h DE_60h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_72h DE_72h-Nr5A2_MA0505.3 9 bp overlap
Olig2 3 datasets
Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PGR 1 dataset
Motif DE_72h DE_72h-PGR_MA2327.1 9 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF044PYR 125 bp overlap
Ptf1A 3 datasets
Motif DE_48h DE_48h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
RBM39 1 dataset
ChIP K-562 GSE120104.RBM39.K-562 145 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 120 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 313 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 253 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 385 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 311 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 384 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 231 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 267 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 215 bp overlap
SOX10 3 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 210 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 305 bp overlap
ChIP K562 ENCFF059YCJ 211 bp overlap
TAL1 11 datasets
ChIP CD34 GSE52924.TAL1.CD34 135 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 241 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 261 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 216 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 206 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 226 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 223 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 159 bp overlap
ChIP K562 ENCFF620GMX 157 bp overlap
ChIP K562 ENCFF661CCK 247 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 199 bp overlap
TAL1::TCF3 3 datasets
Motif DE_48h DE_48h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_60h DE_60h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_72h DE_72h-TAL1TCF3_MA0091.2 10 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 167 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 249 bp overlap
ChIP K562 ENCFF931DJY 308 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 237 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 290 bp overlap
TFAP2A 3 datasets
Motif DE_60h DE_60h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 186 bp overlap
TFAP2B 3 datasets
Motif DE_60h DE_60h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_72h DE_72h-TFAP2B_MA0812.2 9 bp overlap
ChIP SK-N-SH ENCFF869XXQ 226 bp overlap
TFAP2C 2 datasets
Motif DE_60h DE_60h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_72h DE_72h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 4 datasets
Motif DE_48h DE_48h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_60h DE_60h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_72h DE_72h-TFAP2E_MA1569.2 9 bp overlap
TFAP4 5 datasets
Motif DE_48h DE_48h-TFAP4_MA0691.1 10 bp overlap
Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
ChIP K562 ENCFF727PXG 387 bp overlap
ChIP K562 ENCFF727PXG 429 bp overlap
TRIM24 2 datasets
ChIP K-562 ENCSR907MZR.TRIM24.K-562 273 bp overlap
ChIP K-562 ENCSR957LDM.TRIM24.K-562 206 bp overlap
TRPS1 3 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf12 3 datasets
Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Tcf21 3 datasets
Motif DE_48h DE_48h-Tcf21_MA0832.2 10 bp overlap
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap
Twist2 3 datasets
Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 188 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 216 bp overlap
ZNF184 1 dataset
ChIP K-562 ENCSR621ATC.ZNF184.K-562 199 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR117WTM.ZNF24.K-562 425 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 298 bp overlap
ZNF485 1 dataset
ChIP HEK293T GSE78099.ZNF485.HEK293T 227 bp overlap
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