chr1 : 90,841,491 – 90,842,027
536 bp 70 TFs 3 linked genes
This 536 bp open chromatin element is linked to LINC02788, LINC02609, and LINC01763 and is bound by 70 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02788 5.8 kb Proximal Proximity
LINC02609 5.9 kb Proximal Proximity
LINC01763 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:90,836,491 – 90,847,027
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 176 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 170 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 536 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 498 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 106 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 511 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 325 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 278 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 494 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 288 bp overlap
BRD4 2 datasets
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 259 bp overlap
ChIP hESC GSE33281.BRD4.hESC 131 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 150 bp overlap
CLOCK 1 dataset
ChIP BA40_2 GSE96659.CLOCK.BA40_2 135 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 235 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 330 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 461 bp overlap
CTCF 2 datasets
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 238 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 175 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 157 bp overlap
ChIP BLaER1 ENCFF274GAT 405 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 198 bp overlap
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 476 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 158 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 82 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 288 bp overlap
ESR1 4 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 281 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 288 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 269 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 211 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 509 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 300 bp overlap
EZH2 6 datasets
ChIP GM23338 ENCFF613YON 343 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 245 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 536 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 187 bp overlap
ChIP keratinocyte ENCFF070STK 523 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 536 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 235 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 292 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 204 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 516 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 179 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 536 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 490 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 233 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 446 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 352 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 259 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 536 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 219 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 323 bp overlap
ChIP H1 ENCFF078LED 499 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 536 bp overlap
KDM4C 2 datasets
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 209 bp overlap
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 173 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 130 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 69 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 208 bp overlap
ChIP WTC11 ENCFF223QFY 425 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 184 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 213 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 536 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 51 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 78 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 536 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 97 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 180 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 471 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 536 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 364 bp overlap
RAD21 1 dataset
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 190 bp overlap
RFX1 5 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 95 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 63 bp overlap
ChIP K562 ENCFF809XVG 131 bp overlap
ChIP MCF-7 ENCFF973QAD 101 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 74 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 507 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 536 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 486 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 149 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 261 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 165 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 183 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 196 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 149 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 65 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 224 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 159 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
SRSF3 2 datasets
ChIP K-562 ENCSR268QIQ.SRSF3.K-562 305 bp overlap
ChIP K-562 GSE120104.SRSF3.K-562 245 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 296 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 536 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 202 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 189 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 115 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 201 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 508 bp overlap
ChIP K562 ENCFF875HLX 169 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 341 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 236 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 362 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 215 bp overlap