chr5 : 64,765,815 – 64,766,436
621 bp 84 TFs 2 linked genes
This 621 bp open chromatin element is linked to SREK1IP1 and CWC27 and is bound by 84 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SREK1IP1 2.2 kb Proximal Proximity
CWC27 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:64,760,815 – 64,771,436
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 15 datasets
ChIP LNCaP ERP003503.AR.LNCaP 137 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 157 bp overlap
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 126 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 215 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 250 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 156 bp overlap
ChIP LNCaP_SHFOXA1_RPMIFBS GSE69043.AR.LNCaP_SHFOXA1_RPMIFBS 140 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 132 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 138 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 141 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 176 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 220 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 232 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 153 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 92 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 574 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 436 bp overlap
ATF3 6 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 219 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 126 bp overlap
ChIP HCT116 ENCFF088WVX 310 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 485 bp overlap
ChIP K562 ENCFF604FPV 218 bp overlap
ChIP K562 ENCFF921JQW 492 bp overlap
ATF4 2 datasets
ChIP HepG2 ENCFF903ADR 325 bp overlap
ChIP K-562 ENCSR145TSJ.ATF4.K-562 298 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 213 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 111 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BRD4 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 264 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 264 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 163 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 280 bp overlap
CEBPB 10 datasets
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 221 bp overlap
ChIP HCT116 ENCFF097OLY 340 bp overlap
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF536NTI 221 bp overlap
ChIP IMR-90 ENCFF468UGY 251 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 167 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 116 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 197 bp overlap
CEBPD 1 dataset
ChIP HepG2 ENCFF345JDB 285 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR620VIC.CEBPG.K-562 195 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 210 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 581 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 415 bp overlap
DAXX 2 datasets
ChIP PC-3 GSE68647.DAXX.PC-3 295 bp overlap
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 224 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 249 bp overlap
E2F7 2 datasets
ChIP IMR-90_SENES_SHCTR GSE40343.E2F7.IMR-90_SENES_SHCTR 176 bp overlap
ChIP IMR-90_SENES_SHRB GSE40343.E2F7.IMR-90_SENES_SHRB 142 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 141 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 357 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 305 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 350 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 143 bp overlap
EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.EPAS1.PC-3_hypoxia 198 bp overlap
ERG 2 datasets
ChIP RWPE-1 GSE114241.ERG.RWPE-1 345 bp overlap
ChIP RWPE-1 GSE37752.ERG.RWPE-1 215 bp overlap
ESR1 2 datasets
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 118 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 121 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 138 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 185 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 401 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 240 bp overlap
FOS 4 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 351 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 118 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 152 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 277 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 94 bp overlap
FOXA1 15 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 461 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 399 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 417 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 132 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 105 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 144 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 126 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 121 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 184 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 259 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 234 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 269 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 546 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 408 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 577 bp overlap
FOXA2 13 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 305 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 291 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 296 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 406 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 518 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 347 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 488 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 119 bp overlap
ChIP DE DE-FOXA2-1 580 bp overlap
ChIP DE DE-FOXA2-2 557 bp overlap
ChIP HepG2 ENCFF570ABM 176 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 442 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 195 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 128 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 279 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 158 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 290 bp overlap
ChIP DE DE-GATA4-2 610 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 257 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 343 bp overlap
ChIP DE DE-GATA6-2 428 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 429 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 222 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 512 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 195 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 186 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 466 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 621 bp overlap
JUN 1 dataset
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 406 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 565 bp overlap
JUND 1 dataset
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 280 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 148 bp overlap
ChIP HEK293 ENCFF159QSW 149 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 313 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 372 bp overlap
KLF4 3 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 389 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 615 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 426 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 621 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 295 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 334 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 338 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 180 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 256 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 541 bp overlap
NR3C1 1 dataset
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 114 bp overlap
POLR2A 1 dataset
ChIP transverse colon ENCFF610RWV 328 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 218 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 184 bp overlap
PPARG 2 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 303 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 582 bp overlap
PRDM10 2 datasets
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 166 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 184 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 163 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 109 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 177 bp overlap
ChIP K562 ENCFF967GRF 177 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 331 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 349 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 277 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 209 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 330 bp overlap
ChIP HEK293 ENCFF711QQB 521 bp overlap
SMAD3 6 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 264 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 475 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 312 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 475 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 519 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 309 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 419 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 543 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 508 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 366 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 336 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 197 bp overlap
SP1 2 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 128 bp overlap
ChIP HCT116 ENCFF800LBN 346 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 370 bp overlap
SPI1 9 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 135 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 127 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 190 bp overlap
ChIP GM12878 ENCFF134LCP 205 bp overlap
ChIP GM12891 ENCFF563IUT 192 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 164 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 173 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 164 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 130 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 474 bp overlap
STAT3 3 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 219 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 235 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 201 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 493 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 307 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 205 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 199 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 148 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap