chr5 : 74,765,016 – 74,765,573
557 bp 46 TFs 2 linked genes
This 557 bp open chromatin element is linked to GFM2 and NSA2 and is bound by 46 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GFM2 1.5 kb Proximal Proximity
NSA2 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:74,760,016 – 74,770,573
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 154 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 326 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 126 bp overlap
BRD4 3 datasets
ChIP K-562 GSE140325.BRD4.K-562 152 bp overlap
ChIP K-562_dilution-6-100 GSE140325.BRD4.K-562_dilution-6-100 149 bp overlap
ChIP MV4-11_IBET151_5000nM GSE120715.BRD4.MV4-11_IBET151_5000nM 131 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 166 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 378 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 345 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 282 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 159 bp overlap
ESR1 2 datasets
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 347 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 209 bp overlap
FOXA1 2 datasets
ChIP PDAC GSE64557.FOXA1.PDAC 416 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 421 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 463 bp overlap
ChIP DE DE-FOXA2-2 534 bp overlap
ChIP HepG2 ENCFF570ABM 180 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 506 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 439 bp overlap
ChIP DE DE-GATA4-2 557 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 508 bp overlap
ChIP DE DE-GATA6-2 557 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 390 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 324 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 112 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 332 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 361 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 402 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 194 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 227 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 220 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 206 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 315 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 105 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 368 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 469 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 276 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 195 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 325 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 235 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 196 bp overlap
RELA 2 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 150 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 198 bp overlap
RFX1 7 datasets
ChIP Hep-G2 ENCSR928API.RFX1.Hep-G2 316 bp overlap
ChIP HepG2 ENCFF144SCF 424 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 391 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 352 bp overlap
ChIP K562 ENCFF421AVO 178 bp overlap
ChIP MCF-7 ENCFF782EZS 206 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 382 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 190 bp overlap
SKI 2 datasets
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 464 bp overlap
ChIP HepG2 ENCFF631IPX 359 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 516 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 537 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 515 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 444 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 390 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 207 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 426 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 557 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 218 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 428 bp overlap
TAL1 2 datasets
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 143 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 317 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 173 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCFF436CGE 164 bp overlap