chr1 : 92,473,597 – 92,474,467
870 bp 137 TFs 3 linked genes
This 870 bp open chromatin element is linked to GFI1, RPAP2, and GLMN and is bound by 137 transcription factors.
Linked Genes
3 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GFI1 6.0 kb Proximal Proximity
RPAP2 174.9 kb Distal Multiome
GLMN 175.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:92,468,597 – 92,479,467
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
137 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP CD4_Th1_BAY GSE62482.AFF4.CD4_Th1_BAY 120 bp overlap
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 207 bp overlap
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 190 bp overlap
ARNT 2 datasets
ChIP GM12878 ENCFF831TWO 432 bp overlap
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 367 bp overlap
ATF2 2 datasets
ChIP GM12878 ENCFF521LQJ 314 bp overlap
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 145 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 407 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 333 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BATF 2 datasets
ChIP GM12878 ENCFF954REE 186 bp overlap
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 251 bp overlap
BATF3 2 datasets
ChIP GM12878 GSE97661.BATF3.GM12878 135 bp overlap
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 283 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 271 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 193 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 161 bp overlap
BHLHE40 4 datasets
ChIP GM12878 ENCFF010ZUU 303 bp overlap
ChIP GM12878 ENCFF521IZR 252 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 327 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 324 bp overlap
BRD4 7 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 253 bp overlap
ChIP CD4_Th1_BAY GSE62482.BRD4.CD4_Th1_BAY 118 bp overlap
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 314 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 226 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 227 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 266 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 101 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 247 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 276 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCFF870CVH 294 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 323 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 249 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 251 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 716 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
E2F8 2 datasets
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 282 bp overlap
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 441 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 195 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 113 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 220 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCFF692SMY 374 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 203 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 514 bp overlap
EP300 2 datasets
ChIP GM12878 ENCFF039QRE 304 bp overlap
ChIP GM12878 ENCFF242HCG 276 bp overlap
ETV6 3 datasets
ChIP GM12878 ENCFF105ZMI 336 bp overlap
ChIP GM12878 GSE97661.ETV6.GM12878 399 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 272 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 202 bp overlap
FOXA1 1 dataset
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 202 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 493 bp overlap
ChIP DE DE-FOXA2-2 529 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 377 bp overlap
ChIP GM12878 ENCFF264DJE 99 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 490 bp overlap
ChIP DE DE-GATA4-2 510 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 478 bp overlap
ChIP DE DE-GATA6-2 539 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 314 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 434 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 335 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 342 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HDAC1 1 dataset
ChIP NB4 GSE126720.HDAC1.NB4 160 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF616FJX 492 bp overlap
ChIP GM12878 ENCFF753XDO 452 bp overlap
ChIP GM12878 ENCFF824TGK 444 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 287 bp overlap
ChIP GM12878 ENCFF918AID 288 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 460 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 406 bp overlap
INSM1 1 dataset
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
IRF4 4 datasets
ChIP B-cell GSE142493.IRF4.B-cell 507 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 198 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 156 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 533 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 692 bp overlap
JUN 2 datasets
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 373 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 271 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 618 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 125 bp overlap
KLF4 1 dataset
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
KMT2A 3 datasets
ChIP MV4-11 GSE83671.KMT2A.MV4-11 147 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 599 bp overlap
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 509 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 597 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 179 bp overlap
MEN1 2 datasets
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 113 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 705 bp overlap
MITF 7 datasets
ChIP 501-mel GSE137522.MITF.501-mel 333 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 256 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 377 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 323 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 317 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 313 bp overlap
ChIP K562 ENCFF731XJJ 281 bp overlap
MLLT3 1 dataset
ChIP THP-1 GSE79899.MLLT3.THP-1 266 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 469 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 342 bp overlap
MYB 1 dataset
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 348 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 89 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 469 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 580 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 295 bp overlap
NFATC1 1 dataset
ChIP GM12878 ENCFF023CAZ 418 bp overlap
NFATC3 2 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 444 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 420 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 315 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 351 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 442 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
ONECUT3 1 dataset
Motif DE_36h DE_36h-ONECUT3_MA0757.2 12 bp overlap
PAX3 1 dataset
Motif DE_36h DE_36h-PAX3_MA0780.1 10 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 157 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 199 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 367 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 323 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 541 bp overlap
POLR2A 3 datasets
ChIP GM12891 ENCFF379FCI 501 bp overlap
ChIP GM19193 ENCFF599VTO 525 bp overlap
ChIP HL-60 ENCFF321XKE 850 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 298 bp overlap
Pax7 1 dataset
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
RAD51 2 datasets
ChIP GM12878 ENCFF916JXQ 346 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 495 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 233 bp overlap
RELA 2 datasets
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 388 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 162 bp overlap
RELB 1 dataset
ChIP GM12878 ENCFF217ADF 367 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 67 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 188 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 500 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 367 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 404 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 446 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 305 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 435 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 522 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 384 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCFF327LDR 437 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 276 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 396 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 158 bp overlap
STAT5B 2 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 250 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 310 bp overlap
SUPT5H 1 dataset
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 870 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 356 bp overlap
Sox17 1 dataset
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 324 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 4 datasets
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCFF951HUW 290 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 526 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 339 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 108 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 104 bp overlap
TFE3 1 dataset
ChIP K562 ENCFF697ABG 170 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
USF1 2 datasets
ChIP K-562 ENCSR000BKT.USF1.K-562 246 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 129 bp overlap
USF2 2 datasets
ChIP GM12878 ENCFF078SJX 266 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 433 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 172 bp overlap
ZBTB17 1 dataset
Motif DE_36h DE_36h-ZBTB17_MA2102.1 8 bp overlap
ZNF135 1 dataset
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
ZNF281 1 dataset
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ZNF331 1 dataset
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
ZNF35 1 dataset
Motif DE_36h DE_36h-ZNF35_MA2333.1 7 bp overlap
ZNF680 1 dataset
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap