chr5 : 78,689,782 – 78,690,552
770 bp 97 TFs 2 linked genes
This 770 bp open chromatin element is linked to LHFPL2 and ARSB and is bound by 97 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LHFPL2 41.3 kb Distal Multiome
ARSB 295.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:78,684,782 – 78,695,552
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
Atf3 1 dataset
Motif DE_36h DE_36h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_36h DE_36h-BACH1_MA1633.2 9 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BATF 1 dataset
Motif DE_36h DE_36h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_36h DE_36h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_36h DE_36h-BNC2_MA1928.2 7 bp overlap
BRD3 1 dataset
ChIP K-562_dilution-6-100 GSE140325.BRD3.K-562_dilution-6-100 120 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CREM 2 datasets
ChIP WTC11 ENCFF209ZUE 347 bp overlap
ChIP WTC11 ENCFF209ZUE 144 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
EHF 1 dataset
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 628 bp overlap
ERG 1 dataset
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 158 bp overlap
ETV1 2 datasets
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 146 bp overlap
ETV7 1 dataset
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
FOS 2 datasets
Motif DE_36h DE_36h-FOS_MA0476.2 8 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 191 bp overlap
FOSL1 1 dataset
Motif DE_36h DE_36h-FOSL1_MA0477.3 9 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 655 bp overlap
ChIP DE DE-FOXA2-2 712 bp overlap
Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap
FOXB1 1 dataset
Motif DE_36h DE_36h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_36h DE_36h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_36h DE_36h-FOXC2_MA0846.2 11 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 157 bp overlap
FOXG1 1 dataset
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
FOXK1 1 dataset
Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap
FOXK2 1 dataset
Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap
FOXL1 1 dataset
Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
FOXO4 1 dataset
Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap
FOXO6 1 dataset
Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
FOXP3 1 dataset
Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap
FOXS1 1 dataset
Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap
Foxf1 1 dataset
Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap
Foxj2 1 dataset
Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap
Foxj3 1 dataset
Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap
Foxl2 1 dataset
Motif DE_36h DE_36h-Foxl2_MA1607.2 10 bp overlap
Foxo1 1 dataset
Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap
Foxo3 1 dataset
Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap
Foxq1 1 dataset
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
GATA1 1 dataset
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 163 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 734 bp overlap
ChIP DE DE-GATA4-2 770 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 741 bp overlap
ChIP DE DE-GATA6-2 770 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 451 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 441 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 524 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 707 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 485 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 372 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Jun 1 dataset
Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MEIS2 1 dataset
Motif DE_36h DE_36h-MEIS2_MA1640.2 9 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 290 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 484 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 570 bp overlap
ChIP hESC GSE18292.NANOG.hESC 139 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 232 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 232 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 83 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 102 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
PBX2 1 dataset
Motif DE_36h DE_36h-PBX2_MA1113.3 9 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 184 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 770 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 276 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 641 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 579 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 297 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 312 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 277 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 623 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 725 bp overlap
SOX2 1 dataset
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
SOX21 1 dataset
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
SOX4 1 dataset
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
SPIB 1 dataset
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Sox1 1 dataset
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Sox11 1 dataset
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Sox5 1 dataset
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 405 bp overlap
TBP 1 dataset
Motif DE_36h DE_36h-TBP_MA0108.3 7 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 298 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF677 2 datasets
ChIP HEK293 ENCFF220HCQ 277 bp overlap
ChIP HEK293 ENCSR279KDC.ZNF677.HEK293 208 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 165 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 357 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 450 bp overlap