chr5 : 127,073,990 – 127,075,174
1,184 bp 75 TFs 2 linked genes
This 1.2 kb open chromatin element is linked to ENSG00000279446 and C5orf63 and is bound by 75 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000279446 404 bp At TSS Proximity
C5orf63 498 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:127,068,990 – 127,080,174
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 157 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 166 bp overlap
BCL3 1 dataset
ChIP A549 ENCFF214WKT 120 bp overlap
BRD2 4 datasets
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 69 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801 316 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801_rDNA 316 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 122 bp overlap
BRD3 2 datasets
ChIP H-1_DE GSE126661.BRD3.H-1_DE 453 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 201 bp overlap
BRD4 15 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 204 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 55 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 72 bp overlap
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 87 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 141 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 275 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 225 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 402 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD4.MDA-MB-231_JQ1 206 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 212 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 212 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_rDNA 206 bp overlap
ChIP VCaP_R1881 GSE148358.BRD4.VCaP_R1881 77 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 112 bp overlap
BRD9 2 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD9.MDA-MB-231_JQ1 263 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 388 bp overlap
CSNK2A1 1 dataset
ChIP LNCaP_DHT GSE58607.CSNK2A1.LNCaP_DHT 104 bp overlap
CTCF 1 dataset
ChIP NCI-H929 ENCFF305JAB 67 bp overlap
EED 1 dataset
ChIP HepG2 ENCFF347CCA 95 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 201 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 79 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 121 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 490 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 364 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 163 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 190 bp overlap
FOXA1 10 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 348 bp overlap
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 584 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 235 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 128 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 401 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 335 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 478 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 149 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 194 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 368 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 197 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 443 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 298 bp overlap
ChIP DE DE-FOXA2-1 891 bp overlap
ChIP DE DE-FOXA2-2 889 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 276 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 308 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 437 bp overlap
ChIP DE DE-GATA4-1 791 bp overlap
ChIP DE DE-GATA4-2 931 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 427 bp overlap
GATA6 6 datasets
ChIP AGS GSE51705.GATA6.AGS 230 bp overlap
ChIP DE DE-GATA6-1 695 bp overlap
ChIP DE DE-GATA6-2 865 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 694 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 601 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 351 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 264 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 154 bp overlap
IKZF1 1 dataset
ChIP K-562 ENCSR395HWC.IKZF1.K-562 340 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 213 bp overlap
KDM5B 1 dataset
ChIP HepG2 ENCFF706LUI 79 bp overlap
LIN54 1 dataset
ChIP HepG2 ENCFF662XDE 76 bp overlap
MAFK 2 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 133 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
MGA 1 dataset
ChIP HepG2 ENCFF057YJE 68 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 78 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 147 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 115 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 248 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 155 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 237 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 220 bp overlap
PRPF4 1 dataset
ChIP HepG2 ENCFF431ZRN 213 bp overlap
RAD21 1 dataset
ChIP MCF-7 ENCFF694KOM 82 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 161 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 490 bp overlap
SATB1 1 dataset
ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 317 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 286 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1020 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1184 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 853 bp overlap
SMAD3 3 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 330 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 281 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 229 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 192 bp overlap
SNAPC4 1 dataset
ChIP HepG2 ENCFF536CFY 114 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 376 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 456 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 240 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 424 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 362 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 195 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 228 bp overlap
TIGD6 1 dataset
ChIP HepG2 ENCFF358XWR 74 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 190 bp overlap
ZBTB33 1 dataset
ChIP GM12878 ENCSR542FLV.ZBTB33.GM12878 94 bp overlap
ZBTB37 1 dataset
ChIP HepG2 ENCFF717TTW 247 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 65 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 146 bp overlap
ZFX 2 datasets
ChIP C4-2B ENCFF652WZM 52 bp overlap
ChIP K562 ENCFF536AJO 160 bp overlap
ZNF189 1 dataset
ChIP HEK293T GSE78099.ZNF189.HEK293T 154 bp overlap
ZNF20 1 dataset
ChIP HepG2 ENCFF518BKZ 194 bp overlap
ZNF274 1 dataset
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 150 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 136 bp overlap
ZNF317 1 dataset
ChIP HepG2 ENCFF018ISP 70 bp overlap
ZNF383 1 dataset
ChIP HepG2 ENCFF358SRK 146 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 251 bp overlap
ZNF501 1 dataset
ChIP HepG2 ENCFF879XZR 186 bp overlap
ZNF518A 1 dataset
ChIP HEK293 ENCSR159GFL.ZNF518A.HEK293 118 bp overlap
ZNF598 1 dataset
ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 245 bp overlap
ZNF629 1 dataset
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 250 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 148 bp overlap
ZNF778 1 dataset
ChIP HepG2 ENCFF967DPC 90 bp overlap
ZNF883 1 dataset
ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 212 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 295 bp overlap
Huangfu Lab · Publications · Resources · Contact