chr5 : 127,077,445 – 127,077,835
390 bp 96 TFs 2 linked genes
This 390 bp open chromatin element is linked to ENSG00000279446 and C5orf63 and is bound by 96 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000279446 3.9 kb Proximal Proximity
C5orf63 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:127,072,445 – 127,082,835
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 301 bp overlap
ChIP K562 ENCFF938UXQ 385 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 116 bp overlap
ATF3 5 datasets
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 132 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 277 bp overlap
ChIP K-562 ENCSR632DCH.ATF3.K-562 248 bp overlap
ChIP K562 ENCFF604FPV 185 bp overlap
ChIP K562 ENCFF921JQW 149 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 273 bp overlap
Atf3 1 dataset
Motif DE_48h DE_48h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_48h DE_48h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_48h DE_48h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_48h DE_48h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_48h DE_48h-BATF3_MA0835.3 7 bp overlap
BNC2 1 dataset
Motif DE_48h DE_48h-BNC2_MA1928.2 7 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 162 bp overlap
ChIP HepG2 ENCFF175DFS 146 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 220 bp overlap
ChIP K562 ENCFF783ADE 356 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 390 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 384 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 298 bp overlap
ERG 1 dataset
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 132 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 162 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_36h DE_36h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
Motif DE_48h DE_48h-FOS_MA0476.2 8 bp overlap
FOSL1 3 datasets
Motif DE_48h DE_48h-FOSL1_MA0477.3 9 bp overlap
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 308 bp overlap
ChIP K562 ENCFF455MKD 390 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 134 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 142 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 214 bp overlap
ChIP DE DE-FOXA2-1 390 bp overlap
ChIP DE DE-FOXA2-2 390 bp overlap
FOXH1 2 datasets
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 150 bp overlap
GATA1 6 datasets
ChIP K-562 GSE107726.GATA1.K-562 328 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 222 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 254 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 220 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 214 bp overlap
GATA1::TAL1 2 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 9 datasets
ChIP ESF GSE108408.GATA2.ESF 237 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 340 bp overlap
ChIP HepG2 ENCFF905PYM 110 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 269 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 195 bp overlap
ChIP dermal-fibroblast GSE51025.GATA2.dermal-fibroblast 153 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 283 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 312 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 290 bp overlap
GATA3 2 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 300 bp overlap
ChIP A549 ENCFF226FVV 329 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 201 bp overlap
ChIP DE DE-GATA4-1 390 bp overlap
ChIP DE DE-GATA4-2 390 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 324 bp overlap
GATA6 11 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 104 bp overlap
ChIP DE DE-GATA6-1 390 bp overlap
ChIP DE DE-GATA6-2 390 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 320 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 390 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 342 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 390 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 390 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 352 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 247 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 390 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 267 bp overlap
ChIP K562 ENCFF968WBH 379 bp overlap
HES1 2 datasets
ChIP K-562 ENCSR091JXL.HES1.K-562 220 bp overlap
ChIP K562 ENCFF919JVU 267 bp overlap
HNF1A 3 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 217 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 189 bp overlap
ChIP Hep-G2 ENCSR800QIT.HNF1A.Hep-G2 173 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 318 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 195 bp overlap
JUN 2 datasets
ChIP K-562 ENCSR000FAH.JUN.K-562 122 bp overlap
ChIP K-562 ENCSR000EFS.JUN.K-562 131 bp overlap
JUND 3 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 182 bp overlap
ChIP K562 ENCFF336RCR 320 bp overlap
ChIP K562 ENCFF830LVJ 256 bp overlap
Jun 1 dataset
Motif DE_48h DE_48h-Jun_MA0489.3 8 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 241 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 151 bp overlap
Mecom 2 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 52 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 89 bp overlap
NKX2-4 2 datasets
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_48h DE_48h-NKX2-4_MA2003.2 8 bp overlap
ONECUT1 2 datasets
Motif DE_36h DE_36h-ONECUT1_MA0679.3 9 bp overlap
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 177 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 321 bp overlap
POU5F1 2 datasets
ChIP NCCIT GSE36134.POU5F1.NCCIT 224 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 191 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 164 bp overlap
REL 2 datasets
Motif DE_36h DE_36h-REL_MA0101.1 10 bp overlap
Motif DE_48h DE_48h-REL_MA0101.1 10 bp overlap
RELA 32 datasets
Motif DE_36h DE_36h-RELA_MA0107.1 10 bp overlap
Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 150 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 333 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 291 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 259 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 310 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 234 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 303 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 347 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 365 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 304 bp overlap
ChIP aortic-endothelial-cell_IL1B_D24 GSE139377.RELA.aortic-endothelial-cell_IL1B_D24 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 321 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 305 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 292 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 339 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 284 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 252 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 287 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 274 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 367 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 354 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 243 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 348 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 248 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 272 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 156 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 244 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 219 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 254 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 194 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 321 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 291 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 272 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 390 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 382 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 295 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 390 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 390 bp overlap
SMAD3 3 datasets
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 228 bp overlap
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 265 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 254 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 152 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 341 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 383 bp overlap
ChIP K562 ENCFF506JCB 371 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 377 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 245 bp overlap
SMARCB1 1 dataset
ChIP TTC-1240 GSE124903.SMARCB1.TTC-1240 161 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 245 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 294 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 308 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 233 bp overlap
SNAI2 1 dataset
Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_36h DE_36h-SNAI3_MA1559.2 9 bp overlap
SOX13 4 datasets
Motif DE_36h DE_36h-SOX13_MA1120.2 7 bp overlap
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
ChIP HepG2 ENCFF062VSQ 303 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 227 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 379 bp overlap
SOX2 3 datasets
Motif DE_36h DE_36h-SOX2_MA0143.5 7 bp overlap
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
SOX21 3 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
SOX4 2 datasets
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SOX6 2 datasets
ChIP K-562 ENCSR788RSW.SOX6.K-562 355 bp overlap
ChIP K562 ENCFF059YCJ 372 bp overlap
SOX8 2 datasets
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
SOX9 2 datasets
Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
Sox1 3 datasets
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Sox17 2 datasets
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox3 3 datasets
Motif DE_36h DE_36h-Sox3_MA0514.3 7 bp overlap
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Sox5 2 datasets
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox7 2 datasets
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Stat5b 2 datasets
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
Stat6 2 datasets
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 307 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 130 bp overlap
THRB 2 datasets
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
TP63 1 dataset
ChIP JHU-029 GSE88859.TP63.JHU-029 185 bp overlap
Thap11 2 datasets
Motif DE_36h DE_36h-Thap11_MA1573.2 14 bp overlap
Motif DE_48h DE_48h-Thap11_MA1573.2 14 bp overlap
ZEB1 1 dataset
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 283 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 376 bp overlap
ZNF140 2 datasets
Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap
Motif DE_48h DE_48h-ZNF140_MA1589.2 19 bp overlap
ZNF184 2 datasets
Motif DE_36h DE_36h-ZNF184_MA2120.1 13 bp overlap
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 231 bp overlap
ZNF354C 2 datasets
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap