Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

41 transcription factors

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 447 bp overlap

ChIP H1 ENCFF399KAM 229 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 447 bp overlap

ASXL3 1 dataset

ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 149 bp overlap

BCOR 3 datasets

ChIP WA01 GSE104690.BCOR.WA01 197 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 167 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 60 bp overlap

BRD4 4 datasets

ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 147 bp overlap

ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 411 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 68 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 144 bp overlap

CBX2 1 dataset

ChIP K-562 ENCSR000ATU.CBX2.K-562 395 bp overlap

CEBPB 1 dataset

ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 105 bp overlap

CTCF 5 datasets

ChIP A-673 ENCSR611JJS.CTCF.A-673 195 bp overlap

ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 156 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 234 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 136 bp overlap

ChIP neural ENCSR822CEA.CTCF.neural 170 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF896HSY 213 bp overlap

EBF1 2 datasets

ChIP MUTUL GSE75503.EBF1.MUTUL 283 bp overlap

ChIP NALM-6 GSE126300.EBF1.NALM-6 199 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 349 bp overlap

EZH2 1 dataset

ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 96 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 211 bp overlap

FEZF1 1 dataset

ChIP HEK293 GSE76494.FEZF1.HEK293 160 bp overlap

GATA2 2 datasets

ChIP LNCaP GSE38391.GATA2.LNCaP 166 bp overlap

ChIP LNCaP GSE52725.GATA2.LNCaP 166 bp overlap

GATA3 1 dataset

ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 172 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 373 bp overlap

ChIP DE DE-GATA4-2 393 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 365 bp overlap

ChIP DE DE-GATA6-2 445 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 437 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 434 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 438 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 404 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 447 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 447 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 349 bp overlap

GLIS1 1 dataset

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 208 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 351 bp overlap

HAND2 1 dataset

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 160 bp overlap

HOXB13 7 datasets

ChIP prostate_2480 GSE130408.HOXB13.prostate_2480 256 bp overlap

ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 117 bp overlap

ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 229 bp overlap

ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 167 bp overlap

ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 176 bp overlap

ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 298 bp overlap

ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 145 bp overlap

JUN 2 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 288 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 438 bp overlap

NANOG 7 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 132 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 447 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 416 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 447 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 420 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 420 bp overlap

ChIP hESC GSE18292.NANOG.hESC 189 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 185 bp overlap

POU5F1 3 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 302 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 266 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 328 bp overlap

PRDM1 1 dataset

ChIP fetal_testis GSE100639.PRDM1.fetal_testis 164 bp overlap

RAD21 1 dataset

ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 156 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 416 bp overlap

RNF2 2 datasets

ChIP WA09 GSE105028.RNF2.WA09 229 bp overlap

ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 363 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 138 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 277 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 435 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 392 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 281 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 381 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 447 bp overlap

SMARCA4 3 datasets

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 171 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 208 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 256 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 315 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 322 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 330 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 95 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 336 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 240 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 213 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 189 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 198 bp overlap

TFAP2B 2 datasets

ChIP SK-N-SH ENCFF869XXQ 388 bp overlap

ChIP SK-N-SH ENCFF869XXQ 300 bp overlap

TFAP2C 2 datasets

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 126 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 408 bp overlap

Gene	Dist. to TSS	Distance	Link type
PCDHGC4	661 bp	At TSS	Proximity
PCDHGC5	4.7 kb	Proximal	Proximity
PCDHGC3	8.0 kb	Proximal	Proximity

Genome Browser