chr5 : 141,494,729 – 141,495,611
882 bp 89 TFs 2 linked genes
This 882 bp open chromatin element is linked to PCDHGC5 and PCDHGC4 and is bound by 89 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PCDHGC5 5.6 kb Proximal Proximity
PCDHGC4 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:141,489,729 – 141,500,611
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AFF1 4 datasets
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 241 bp overlap
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 216 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 221 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 310 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 205 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 400 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 872 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 188 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 350 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 882 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 616 bp overlap
BRD4 16 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 405 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 245 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 360 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 214 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 140 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 528 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 556 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 172 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 385 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 262 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 466 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 325 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 582 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 596 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 463 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 171 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 78 bp overlap
CHD4 2 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 263 bp overlap
ChIP 501-mel GSE134848.CHD4.501-mel 179 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 276 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 304 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 154 bp overlap
CTCF 6 datasets
ChIP chondrocyte ENCFF134ORZ 581 bp overlap
ChIP chondrocyte ENCFF134ORZ 556 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 246 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 232 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 239 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 404 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 338 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 669 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 445 bp overlap
ERG 2 datasets
ChIP SEM GSE117864.ERG.SEM 687 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 208 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 392 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 250 bp overlap
ETS1 5 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 383 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 348 bp overlap
ChIP K-562 ENCSR000BKQ.ETS1.K-562 148 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 427 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 191 bp overlap
EZH2 4 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 299 bp overlap
ChIP H1 ENCFF232NZA 259 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 357 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 273 bp overlap
FLI1 7 datasets
ChIP A-673 GSE99959.FLI1.A-673 266 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 231 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 258 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 236 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 281 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 441 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 203 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 127 bp overlap
ChIP K-562 ENCSR000EWM.GATA1.K-562 122 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 101 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 147 bp overlap
GATA2 8 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 178 bp overlap
ChIP K562 ENCFF513FTZ 204 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 95 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 387 bp overlap
ChIP SH-SY5Y ENCFF485YIB 208 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 145 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 124 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 245 bp overlap
GATA3 7 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 199 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 125 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 83 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 183 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 124 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 127 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 147 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 190 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 171 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 270 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 113 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 455 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 769 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 213 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 141 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 94 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 202 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 214 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 226 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 183 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 714 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 620 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 262 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 882 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 302 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 465 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 350 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 698 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 882 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 474 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 137 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 248 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 224 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 102 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 166 bp overlap
KMT2A 3 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 275 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 56 bp overlap
ChIP L826 GSE83671.KMT2A.L826 331 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 175 bp overlap
MAX 1 dataset
ChIP melanocyte GSE115845.MAX.melanocyte 245 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 600 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 383 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MRTFA 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFA.A-673-clone-Asp114 314 bp overlap
MTA2 2 datasets
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 193 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 228 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 173 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 716 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 383 bp overlap
NCOA3 1 dataset
ChIP MCF-7 ENCSR686SOV.NCOA3.MCF-7 103 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 299 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 184 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 230 bp overlap
POLR2A 3 datasets
ChIP SK-N-MC ENCFF088IVG 491 bp overlap
ChIP neural cell ENCFF604SPB 315 bp overlap
ChIP vagina ENCFF384GAB 631 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 94 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 252 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 475 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 568 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 393 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 207 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 180 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 443 bp overlap
RAD21 2 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 255 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 215 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 339 bp overlap
RBPJ 4 datasets
ChIP GIC GSE79734.RBPJ.GIC 158 bp overlap
ChIP GIC GSE79734.RBPJ.GIC 203 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 653 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 631 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 140 bp overlap
REST 3 datasets
ChIP hippocampus GSE144226.REST.hippocampus 243 bp overlap
ChIP neural cell ENCFF882LXX 149 bp overlap
ChIP neural cell ENCFF882LXX 367 bp overlap
RNF2 3 datasets
ChIP WA09 GSE105028.RNF2.WA09 208 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 323 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 194 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 205 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 257 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 119 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 669 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 578 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 579 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 534 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 396 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 511 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 493 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 59 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 151 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 139 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 882 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 194 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 306 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 459 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 260 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 297 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 106 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 106 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 106 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 169 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 305 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 238 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 105 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 209 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 800 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 851 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 797 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 406 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 553 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 326 bp overlap
YY1 2 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 274 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 243 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 236 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 385 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 266 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 252 bp overlap