chr5 : 141,674,753 – 141,675,190
437 bp 101 TFs 2 linked genes
This 437 bp open chromatin element is linked to ARAP3 and ENSG00000289478 and is bound by 101 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ARAP3 7.0 kb Proximal Proximity
ENSG00000289478 7.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:141,669,753 – 141,680,190
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP WTC11 ENCFF556XTF 417 bp overlap
ChIP WTC11 ENCFF556XTF 218 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 437 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 361 bp overlap
Ahr::Arnt 1 dataset
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 356 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 226 bp overlap
BRD4 1 dataset
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 165 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 153 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 70 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 364 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 315 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 156 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 293 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 437 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 369 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 193 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 101 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif ES_0h ES_0h-EOMES_MA0800.2 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 250 bp overlap
ERF::FOXI1 2 datasets
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 272 bp overlap
ETV1 1 dataset
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::DRGX 2 datasets
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
Motif ES_0h ES_0h-ETV5DRGX_MA1944.2 12 bp overlap
ETV5::HOXA2 2 datasets
Motif DE_12h DE_12h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif ES_0h ES_0h-ETV5HOXA2_MA1948.2 12 bp overlap
FLI1::DRGX 2 datasets
Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap
Motif ES_0h ES_0h-FLI1DRGX_MA1949.2 14 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 345 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::FLI1 2 datasets
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 201 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 387 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 225 bp overlap
HNF4A 2 datasets
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
Motif ES_0h ES_0h-HNF4A_MA0114.5 9 bp overlap
HNF4G 2 datasets
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
Motif ES_0h ES_0h-HNF4G_MA0484.3 9 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ISL2 2 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
Ikzf3 1 dataset
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 217 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 297 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 323 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 390 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 404 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 404 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 311 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 216 bp overlap
KLF13 2 datasets
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF3 2 datasets
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Motif ES_0h ES_0h-KLF3_MA1516.2 10 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 143 bp overlap
KLF5 2 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 95 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 437 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 171 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 166 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 256 bp overlap
MTF1 1 dataset
Motif ES_0h ES_0h-MTF1_MA0863.1 14 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 289 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 437 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 375 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 317 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 437 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 437 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 432 bp overlap
ChIP hESC GSE20650.NANOG.hESC 334 bp overlap
ChIP hESC GSE18292.NANOG.hESC 190 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 264 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 273 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 206 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 253 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PKNOX1 1 dataset
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 235 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 437 bp overlap
ChIP H1 ENCFF566JSR 437 bp overlap
ChIP H1 ENCFF833NJP 354 bp overlap
POU5F1 13 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 163 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 367 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 437 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 437 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 289 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 246 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 234 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 437 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 437 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 321 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 368 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 287 bp overlap
PRDM10 3 datasets
ChIP HEK293 ENCFF145WQQ 337 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 280 bp overlap
ChIP K562 ENCFF740YLK 385 bp overlap
Prdm15 2 datasets
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 181 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 300 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 183 bp overlap
REST 1 dataset
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 165 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 131 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 266 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 382 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 146 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 202 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 172 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 215 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 321 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 437 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 315 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 366 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 249 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 305 bp overlap
ChIP hESC GSE69479.SOX2.hESC 241 bp overlap
ChIP hESC GSE18292.SOX2.hESC 187 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 365 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 273 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SUPT5H 2 datasets
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 68 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 166 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 186 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 130 bp overlap
TBP 5 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 130 bp overlap
ChIP hESC GSE122298.TBP.hESC 152 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 129 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 418 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 258 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif ES_0h ES_0h-TBR1_MA0802.2 9 bp overlap
TBX19 1 dataset
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 303 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 365 bp overlap
TEAD1 4 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
ChIP WTC11 ENCFF502QUV 393 bp overlap
ChIP WTC11 ENCFF502QUV 249 bp overlap
TEAD4 6 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 172 bp overlap
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 396 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 304 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 437 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 360 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 392 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 354 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 97 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 320 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 154 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 437 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZBTB32 2 datasets
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
Motif ES_0h ES_0h-ZBTB32_MA1580.1 10 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 239 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 267 bp overlap
ZNF143 2 datasets
ChIP WA09 GSE105028.ZNF143.WA09 299 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 324 bp overlap
ZNF175 1 dataset
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 333 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 300 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 128 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 390 bp overlap
ZNF214 1 dataset
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 168 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 437 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 251 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 128 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF76 2 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
Huangfu Lab · Publications · Resources · Contact